FC931486

Overview
NameFC931486
Unique NameFC931486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_HAEIN (50S ribosomal protein L2 OS=Haemophilus influenzae GN=rplB PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HP
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_HAEIG (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittGG) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HP
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_HAEIE (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittEE) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HP
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_HAEI8 (50S ribosomal protein L2 OS=Haemophilus influenzae (strain 86-028NP) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  + + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  II+   +  T R++  SG  + + + C A IG+V       + L KAG N +   R      P VRG AMNPV+HP
Sbjct:   62 YRLIDFKRNKLDIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLSVGDQIQAGINSPIKVGNSLPMRNIPVGSTVHNVELKPGKGGQIARSAGAYVQIIAREGNYVTLRLR--SGEMRKVLAECVATIGEVGNSEHMLRVLGKAGANRWRGIR------PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_DELAS (50S ribosomal protein L2 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 73/234 (31.20%), Postives = 113/234 (48.29%), Query Frame = 3
Query:   30 YIHQPAAQAQSLSPS-KEMGRV----IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHP 710
            ++H+ A  A  L P  ++ GR     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + +   CRA IG+VA    + + L KAG       VKR     P VRGV MNPV+HP
Sbjct:   23 HLHKGAGFAPLLEPQHQKSGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRTKDGIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKIGAGAQIARSAGTSATLLAR--EGIYAQVRMRSGEVRKVHIECRATIGEVANEEHSLRRLGKAG-------VKRWMGIRPTVRGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_CLONN (50S ribosomal protein L2 OS=Clostridium novyi (strain NT) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 70/206 (33.98%), Postives = 98/206 (47.57%), Query Frame = 3
Query:  102 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHP 710
            ++ G  S  K    HR G A+  +R +DF      +   VA I +DP R A +A V +        +K   IA  G+  G  V  G  A + VGN LP+++IP G V+ NVE   G    L RA+G  A +++   +     ++LPSG  + +   CRA IG V+        + KAG   H  FR      P VRG  MNP +HP
Sbjct:   39 KKAGRNSQGKITVRHRGGGAKRKYRIIDFKRTKDGIPAKVASIEYDPNRTAYIALVVYADG-----EKRYIIAPVGLKVGDVVMSGVDADIKVGNALPLKNIPVGTVIHNVELQAGKGAQLVRAAGSSAQLMA--KEGKYAILRLPSGEMRYVRIECRAAIGTVSNVTNDIINIGKAGRKRHLGFR------PTVRGSVMNPNDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_CHLSY (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   87 RVIRAQRKGAGSVFKSH--THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            R+I   RK AG   +      HR G  +  +R +DF      +   V  I +DP R A +A + +        +K   IA  G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HP
Sbjct:   32 RLIEPLRKKAGRNNQGRITVRHRGGGHKRFYRIIDFKRNKFGVPAKVQAIEYDPNRTARIALLAYADG-----EKRYIIAPLGLKVGDTVMSGPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_CHLAA (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   87 RVIRAQRKGAGSVFKSH--THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            R+I   RK AG   +      HR G  +  +R +DF      +   V  I +DP R A +A + +        +K   IA  G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HP
Sbjct:   32 RLIEPLRKKAGRNNQGRITVRHRGGGHKRFYRIIDFKRNKFGVPAKVQAIEYDPNRTARIALLAYADG-----EKRYIIAPLGLKVGDTVMSGPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BACV8 (50S ribosomal protein L2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  141 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            H RK    +R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G  A   +GN LP+ +IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V   G ++  L  +G A     + R   P+ RGV MNPV+HP
Sbjct:   58 HKRK----YRLIDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGSTLVSGANAAPEIGNALPLENIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSACKATIGSV---GNSDHGLESSGKAGRTRWMGRR--PRNRGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  144 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 229          
The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_HAEIN1.128e-1833.8850S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIG1.128e-1833.8850S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIE1.128e-1833.8850S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEI81.128e-1833.8850S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_DELAS1.128e-1831.2050S ribosomal protein L2 OS=Delftia acidovorans (s... [more]
RL2_CLONN1.128e-1833.9850S ribosomal protein L2 OS=Clostridium novyi (str... [more]
RL2_CHLSY1.128e-1833.4950S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RL2_CHLAA1.128e-1833.4950S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RL2_BACV81.128e-1833.6850S ribosomal protein L2 OS=Bacteroides vulgatus (... [more]
RK2_DAUCA1.128e-1832.4650S ribosomal protein L2, chloroplastic OS=Daucus ... [more]

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Properties
Property NameValue
Genbank descriptionC34105F05EF PostHarvP1 Citrus clementina cDNA clone C34105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bp
GATCTTCCCAAAACACACACACCTATATATATATTCATCAGCCCGCCGCA
CAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGC
ACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTA
AGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTAC
CTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCC
GCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGG
AGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGC
GGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTAGATCTAT
CCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGTGATCGCG
GTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAAC
CCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGAT
TATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGA
GGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGA
GTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGT
GGAGCATCCTC
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