FC931486

Overview
NameFC931486
Unique NameFC931486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_TROWT (50S ribosomal protein L2 OS=Tropheryma whipplei (strain Twist) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  162 QFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            ++R +DF   +++G +K  VA I +DP R A +A + F         K   +A  G+  G  V  G  A +  GN L +R IP G ++  VE   G    LAR++G    + +   D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HP
Sbjct:   61 RYRLVDFRRSDKDG-VKAKVAHIEYDPNRTARIALLHFLDG-----AKRYILAPSGLKQGDVVESGSSADIRPGNSLCIRDIPVGTILHAVELRPGQGAKLARSAGSSVRLSAK--DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHP 232          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  162 QFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            ++R +DF   +++G +K  VA I +DP R A +A + F         K   +A  G+  G  V  G  A +  GN L +R IP G ++  VE   G    LAR++G    + +   D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HP
Sbjct:   61 RYRLVDFRRSDKDG-VKAKVAHIEYDPNRTARIALLHFLDG-----AKRYILAPSGLKQGDVVESGSSADIRPGNSLCIRDIPVGTILHAVELRPGQGAKLARSAGSSVRLSAK--DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHP 232          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_SHEDO (50S ribosomal protein L2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 61/182 (33.52%), Postives = 92/182 (50.55%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +   V  I +DP R A +A V +        ++   +AA+GM +G  +  G  + +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HP
Sbjct:   62 YRLIDFKRNKDGIPAKVERIEYDPNRTAHIALVLYADG-----ERRYILAAKGMKSGDPIQSGVGSEIKTGNSMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 61/186 (32.80%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  +   K A + +GN LP+R IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C A IG V+   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 61/186 (32.80%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  +   K A + +GN LP+R IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C A IG V+   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_MOOTA (50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 65/191 (34.03%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  144 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            HR G  +  +R +DF      + G VA I +DP R A +A + +        +K   +A E +  G  V  G +A + VGN LP+  IP G +V NVE   G  G +AR++G  A +++   +     ++LPSG  + +   CRA +GQV   G  +   +  G A  K  +     P VRGV MNPV+HP
Sbjct:   53 HRGGGHKRLYRVIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYILAPENLQVGDQVISGPEADIKVGNALPLSQIPVGTMVHNVELKPGKGGQMARSAGAGAQLMA--KEGGYALLRLPSGEVRKVQESCRATVGQV---GNLDWENINIGKAGRKRWL--GIRPTVRGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_MICAN (50S ribosomal protein L2 OS=Microcystis aeruginosa (strain NIES-843) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 65/193 (33.68%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  138 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            + HR G  +  +R +DF      +   VA I +DP R A +A + ++       +K   IA  G+  G  V  G+ A   VGN LP+  IP G  V N+E   G  G + RA+G +A +++   + D   ++LPS   ++I   C A IG+V         L KAG   H     R   P VRG  MNPV+HP
Sbjct:   51 SRHRGGGHKRLYRIIDFRRDKRDIPAKVAAIEYDPNRNARIALLFYKDG-----EKRYIIAPAGLGVGDTVIAGENAPFEVGNALPLSRIPLGTEVHNIELVPGRGGQMVRAAGGFAQVVA--KEGDYVTIRLPSKEVRMIRRECYATIGKVGNAEARNISLGKAGRTRH-----RGQRPHVRGSVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_METEP (50S ribosomal protein L2 OS=Methylobacterium extorquens (strain PA1) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 63/186 (33.87%), Postives = 94/186 (50.54%), Query Frame = 3
Query:  168 RSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            R++DF  R N  +   V  I +DP R A +A +TF        ++   +A + +  G  V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   63 RNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDG-----KQSYILAPQRLSPGDKVIAGESVDVKPGNAAPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAG---------RNRWLGKRPHVRGVAMNPVDHP 232          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_METC4 (50S ribosomal protein L2 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 63/186 (33.87%), Postives = 94/186 (50.54%), Query Frame = 3
Query:  168 RSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            R++DF  R N  +   V  I +DP R A +A +TF        ++   +A + +  G  V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   63 RNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDG-----KQSYILAPQRLSPGDKVIAGESVDVKPGNAAPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAG---------RNRWLGKRPHVRGVAMNPVDHP 232          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_LACLS (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  141 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            HH  G   ++R +DF      +   VA I +DP R A +A + + +       K   +AA+G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HP
Sbjct:   53 HHGGGHKRKYRMIDFKRTTDNVVAKVATIEYDPNRTANIALIVYANGV-----KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHP 231          
The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_TROWT1.473e-1835.9850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_TROW81.473e-1835.9850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_SHEDO1.473e-1833.5250S ribosomal protein L2 OS=Shewanella denitrifica... [more]
RL2_RICBR1.473e-1832.8050S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB81.473e-1832.8050S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_MOOTA1.473e-1834.0350S ribosomal protein L2 OS=Moorella thermoacetica... [more]
RL2_MICAN1.473e-1833.6850S ribosomal protein L2 OS=Microcystis aeruginosa... [more]
RL2_METEP1.473e-1833.8750S ribosomal protein L2 OS=Methylobacterium extor... [more]
RL2_METC41.473e-1833.8750S ribosomal protein L2 OS=Methylobacterium chlor... [more]
RL2_LACLS1.473e-1834.0350S ribosomal protein L2 OS=Lactococcus lactis sub... [more]

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Properties
Property NameValue
Genbank descriptionC34105F05EF PostHarvP1 Citrus clementina cDNA clone C34105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bp
GATCTTCCCAAAACACACACACCTATATATATATTCATCAGCCCGCCGCA
CAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGC
ACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTA
AGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTAC
CTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCC
GCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGG
AGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGC
GGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTAGATCTAT
CCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGTGATCGCG
GTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAAC
CCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGAT
TATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGA
GGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGA
GTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGT
GGAGCATCCTC
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