FC931486

Overview
NameFC931486
Unique NameFC931486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_LACLM (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  141 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            HH  G   ++R +DF      +   VA I +DP R A +A + + +       K   +AA+G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HP
Sbjct:   53 HHGGGHKRKYRMIDFKRTTDNVVAKVATIEYDPNRTANIALIVYANGV-----KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BUCAT (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HP
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BUCAI (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HP
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BUCA5 (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  165 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HP
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BLOFL (50S ribosomal protein L2 OS=Blochmannia floridanus GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 58/183 (31.69%), Postives = 92/183 (50.27%), Query Frame = 3
Query:  162 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            ++R +DF      +  VV  + +DP R A +A + ++       ++   +A   +  G  +  G    +  GN LP+ +IP G+++ NVE  VG  G LAR++G Y  I+S   D +   ++L SG  + +   CRA IG+V       + L KAG +       R   P VRG AMNP++HP
Sbjct:   63 RYRIIDFKRNKDDVFAVVERMEYDPNRSANIALIVYKDG-----ERRYILAPRNLNVGNKIISGLNVPISPGNSLPLSNIPVGSIIHNVEMKVGKGGQLARSAGTYVQIVSR--DGEYIILRLRSGEIRKVRCECRATIGEVGNNEHMLRALGKAGASRW-----RGIRPTVRGTAMNPIDHP 233          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BACFR (50S ribosomal protein L2 OS=Bacteroides fragilis GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 3
Query:  144 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  + R  RN     RGV MNPV+HP
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRRPRN-----RGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BACFN (50S ribosomal protein L2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 3
Query:  144 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  + R  RN     RGV MNPV+HP
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRRPRN-----RGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RK2_EMIHU (50S ribosomal protein L2, chloroplastic OS=Emiliania huxleyi GN=rpl2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 3
Query:  141 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            H RK     R +DF  ++      VA I +DP R A +A + + +       K   +A   +  G  V  G +A + +GN LP+ +IP G+ V N+E  +G  G +AR++G YA II+   + D   +KLPS   +++   C A +GQV         L KAG +  ++  KR   PKVRGV  NP++HP
Sbjct:   58 HKRK----HRIIDFKRKSIATTARVATIEYDPNRNARIALLHYENGL-----KRYILAPRSLKVGMEVCSGPEAPIEIGNSLPLAAIPLGSTVHNIELTLGKGGQIARSAGTYAQIIA--KEGDFVTLKLPSNEVRLVYKECYATLGQVGNIDAINTCLGKAGRS--RWLGKR---PKVRGVVKNPIDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RK2B_ATRBE (50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 63/207 (30.43%), Postives = 101/207 (48.79%), Query Frame = 3
Query:   90 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G    +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV HP
Sbjct:   46 IITARHRGGG--------HKR---LYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVPKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVNHP 229          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 66/213 (30.99%), Postives = 109/213 (51.17%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFR-HPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +G +  A R   G +     +HR G    ++R +DF   N  + G+V  + +DP R   +A +    + F Y+      +A   +  G  V  G    + +GN LP+R+IP G ++ N+E + G  G + R++G  A +IS + +N    +KLPSG  ++ P+   A IG ++        + KAG +  ++  +R   P VRGVAMNPV+HP
Sbjct:   35 VGMIESAGRNNTGRIT---VYHRGGGHKTKYRYIDFKRSNYNIPGIVERLEYDPNRTCFIALIKDNENNFSYI------LAPHDLKVGDTVITGNDIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKD-ENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS--RWMGRR---PIVRGVAMNPVDHP 232          
The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LACLM1.473e-1834.0350S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_BUCAT1.473e-1831.8750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCAI1.473e-1831.8750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCA51.473e-1831.8750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BLOFL1.473e-1831.6950S ribosomal protein L2 OS=Blochmannia floridanus... [more]
RL2_BACFR1.473e-1833.8650S ribosomal protein L2 OS=Bacteroides fragilis G... [more]
RL2_BACFN1.473e-1833.8650S ribosomal protein L2 OS=Bacteroides fragilis (... [more]
RK2_EMIHU1.473e-1834.2150S ribosomal protein L2, chloroplastic OS=Emilian... [more]
RK2B_ATRBE1.473e-1830.4350S ribosomal protein L2-B, chloroplastic OS=Atrop... [more]
RM02_RECAM1.924e-1830.9960S ribosomal protein L2, mitochondrial OS=Reclino... [more]

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Properties
Property NameValue
Genbank descriptionC34105F05EF PostHarvP1 Citrus clementina cDNA clone C34105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bp
GATCTTCCCAAAACACACACACCTATATATATATTCATCAGCCCGCCGCA
CAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGC
ACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTA
AGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTAC
CTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCC
GCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGG
AGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGC
GGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTAGATCTAT
CCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGTGATCGCG
GTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAAC
CCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGAT
TATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGA
GGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGA
GTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGT
GGAGCATCCTC
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