FC931486

Overview
NameFC931486
Unique NameFC931486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  144 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS-IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ + +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 230          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 63/197 (31.98%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  144 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS--IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ +  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_TRIEI (50S ribosomal protein L2 OS=Trichodesmium erythraeum (strain IMS101) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 68/223 (30.49%), Postives = 109/223 (48.88%), Query Frame = 3
Query:   48 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            A+     P K + +  R ++KG  +       HR G  +  +R +DF      +   VA I +DP R A +A + ++       +K   +   G+  GQ +  G  A L +GN LP+  IP G  V NVE   G  G + R++G  A +++   ++    +KLPSG ++ + + C A +GQ+         L KAG   ++++ KR   P VRG  MNPV+HP
Sbjct:   22 AEVTKSRPEKTLVK-FRHRKKGRNNRGVVTCRHRGGGTKKLYRVVDFHRNKHNIPAKVAAIEYDPYRNARIALLHYQDG-----EKRYILHPLGLKVGQLITSGVNAPLEIGNALPLSKIPLGTDVHNVELVPGKGGQMVRSAGAVAQVVA--KEDQYVTIKLPSGERRKVRASCYATLGQIGNIEHRNISLGKAGR--NRWKGKR---PTVRGSVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 73/222 (32.88%), Postives = 110/222 (49.55%), Query Frame = 3
Query:   66 SPSKEMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEII---HDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEHP 710
            S   E   + R  RK   +V+   T  HR G     +R +DF +RN +  G+ A+++   +DP R   +A+V + +       K   +   G+  G  V  G  A + VGN LP+ +IP G +V N+E + G  G L R++G  A I++   +     ++LPSG ++ +   CRA +GQV         + KAG   H  FR      P VRGV MNPV+HP
Sbjct:   26 STRPEKSLLERLTRKAGRNVYGRITVRHRGGGHKRMYRIIDF-KRNEF-DGIPAKVVSIEYDPNRTCRIAKVVYANG-----AKRYILHPVGLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDHP 232          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  144 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGNRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  144 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKFIPTGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_RALSO (50S ribosomal protein L2 OS=Ralstonia solanacearum GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 71/227 (31.28%), Postives = 108/227 (47.58%), Query Frame = 3
Query:   36 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            H P  + Q     +     I  + KG G     H HH      +R +DF   +++G +   +  + +DP R A +A V F        ++   IA +G   GQ V  G +A +  GN LP+R+IP G  +  VE   G    +AR++G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGVAMNPV+HP
Sbjct:   30 HAPLLEKQFQKSGRNNNGHITTRHKGGG-----HKHH------YRIVDFKRNDKDG-IPAKIERLEYDPNRSANIALVLFADG-----ERRYIIAPKGAVVGQAVANGPEAPIKAGNNLPIRNIPVGTTIHCVEILPGKGAQIARSAGTSAVLLAR--EGIYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRQIGKAGATRW-----RGIRPTVRGVAMNPVDHP 232          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   66 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +P K +  V    + G  +  K    HR G  +  +R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  GK+A + V N LP+ +IP G  V N+E   G  G +AR++G +  IIS   ++    ++L SG  + +   CRA IG++   G     L+  G A  K  +     P VRG AMNP +HP
Sbjct:   28 TPEKRL-LVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDG-----EKRYILAPKGLTVGMQIVSGKEADIKVANCLPLMNIPVGTTVHNIELKPGKGGQIARSAGSFCQIISR--EDKYVLLRLQSGEVRKVLGTCRATIGEI---GNESYKLINYGKAGKKRFL--GIRPTVRGSAMNPNDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_OENOB (50S ribosomal protein L2 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  141 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEHP 710
            HH  G   Q+R +DF          V  I +DP R A +A + +         K   +A +G+  G  V  G  A + VGN LP+ +IPEG ++ N+E   G  G LAR++G  A I+  +       ++L SG  ++IP+  RA IG+V   G  E  L+  G A   ++R K    P VRG  MNP +HP
Sbjct:   53 HHGGGHKQQYRIIDFKRIKDDKTATVKAIEYDPNRTANIALLVYEDGV-----KSYILAPKGLEAGTKVQSGPDADIKVGNALPLGNIPEGTLIHNIELKPGKGGQLARSAGTSAQILGKDDAGKYVIIRLSSGEVRMIPATSRATIGEV---GNAEHSLISWGKAGRSRWRGKT---PHVRGSVMNPNDHP 233          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_LACH4 (50S ribosomal protein L2 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 70/229 (30.57%), Postives = 106/229 (46.29%), Query Frame = 3
Query:   36 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            H  ++    ++ +K    ++ +Q   AG     H    HR G    ++R +DF       K VV  I +DP R A +A + +         K   +A +G+  G  V  G    +  GN L +++IP G  + N+E   G  G L R++G  A ++    D D T V+L SG  + I S CRA IG V   G  +  L+K G A  K  + +   P+ RG  MNP +HP
Sbjct:   15 HMTSSDFAEITKTKPEKTLLESQSHTAGRNSYGHITVRHRGGGHKQKYRIIDFKRNKDNTKAVVKAIEYDPNRTANIALLHYTDGI-----KAYILAPKGLKVGDIVESGDSVDIKPGNALALKNIPSGTSIHNIELKPGKGGQLVRSAGASAQVL--GVDGDYTLVRLQSGEVRKILSSCRATIGVV---GNEQHSLIKLGKAGRKRWLGKR--PQSRGSVMNPNDHP 231          
The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_DIOEL1.924e-1832.1450S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2A_CHLSC1.924e-1831.9850S ribosomal protein L2-A, chloroplastic OS=Chlor... [more]
RL2_TRIEI2.513e-1830.4950S ribosomal protein L2 OS=Trichodesmium erythrae... [more]
RL2_SYMTH2.513e-1832.8850S ribosomal protein L2 OS=Symbiobacterium thermo... [more]
RL2_RICM52.513e-1831.7950S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RICFE2.513e-1831.7950S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_RALSO2.513e-1831.2850S ribosomal protein L2 OS=Ralstonia solanacearum... [more]
RL2_ONYPE2.513e-1831.3450S ribosomal protein L2 OS=Onion yellows phytopla... [more]
RL2_OENOB2.513e-1834.3850S ribosomal protein L2 OS=Oenococcus oeni (strai... [more]
RL2_LACH42.513e-1830.5750S ribosomal protein L2 OS=Lactobacillus helvetic... [more]

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Properties
Property NameValue
Genbank descriptionC34105F05EF PostHarvP1 Citrus clementina cDNA clone C34105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bp
GATCTTCCCAAAACACACACACCTATATATATATTCATCAGCCCGCCGCA
CAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGC
ACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTA
AGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTAC
CTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCC
GCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGG
AGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGC
GGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTAGATCTAT
CCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGTGATCGCG
GTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAAC
CCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGAT
TATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGA
GGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGA
GTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGT
GGAGCATCCTC
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