FC931490

Overview
NameFC931490
Unique NameFC931490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECOBW (Manganese transport protein mntH OS=Escherichia coli (strain K12 / BW2952) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO8A (Manganese transport protein mntH OS=Escherichia coli O8 (strain IAI1) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO81 (Manganese transport protein mntH OS=Escherichia coli O81 (strain ED1a) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO7I (Manganese transport protein mntH OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO5E (Manganese transport protein mntH OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO57 (Manganese transport protein mntH OS=Escherichia coli O157:H7 GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO55 (Manganese transport protein mntH OS=Escherichia coli (strain 55989 / EAEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO45 (Manganese transport protein mntH OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO27 (Manganese transport protein mntH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
[Close]
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_ECO24 (Manganese transport protein mntH OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3 
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 659
            A GV+G  IMPH ++LHS+L Q     +   G  Q+       +  IA+ ++  +NL +    A  F+ +       L  A   LQ         +   +G+ L+AAG SST+ GT AGQ +M GF+   +  W+R  +T    ++P+ IV L+       + V+++   VL S  I  AL+PLL   S   +MG
Sbjct:  200 AAGVLGATIMPHVIYLHSSLTQ-----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATV---FGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILM-GLDPTRILVMSQ---VLLSFGIALALVPLLIFTSDSKLMG 378
The following BLAST results are available for this feature:
BLAST of FC931490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
MNTH_ECOBW2.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO8A2.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO812.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO7I2.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO5E2.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO572.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO552.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO452.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO272.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO242.716e-1531.28Manganese transport protein mntH OS=Escherichia co... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105F09EF PostHarvP1 Citrus clementina cDNA clone C34105F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931490 ID=FC931490; Name=FC931490; organism=Citrus clementina; type=EST; length=733bp
GAGACCAAGCCAAGTGGCTCTGAGCTTCTTATTGGCATTTTGGTTCCAAA
ACTCAGTTCCAAACAATACAGCAGGCTGTTGGAGTTGTGGGCTGTATTAT
CATGCCTCATAATGTGTTTTTGCACTCCGCTCTTGTGCAATCAAGAGATA
TTGATAACAGTAAGAAAGGCCGTGTCCAAGAAGCTCTCAGATACTATTCC
ATTGAGTCTACTATTGCCCTTGTTGTTTCATTCATGATCAATCTTTTTGT
TACAACTGTTTTTGCAAAGGGGTTTTATGGTACTGAACAGGCCAATAACA
TTGGCCTCGTAAATGCTGGCCAGTACCTTCAAGAGAAGTACGGAGGTGGA
CTTTTCCCAATTTTATATATCTGGGGTATTGGGTTATTAGCAGCTGGACA
GAGTAGCACCATTACCGGCACTTATGCTGGGCAGTTTATCATGGGAGGTT
TCCTAAATTTGAGGTTGAAAAAATGGATGAGGGCACTGATAACACGGAGC
TGTGCCATTGTCCCAACTATTATTGTTGCACTTGTTTTTGATACCTCTGA
AGACATGTTAGATGTTTTAAATGAATGGCTAAATGTGCTACAGTCAGTTC
AGATCCCTTTTGCTCTTATCCCACTTTTATATTTGGTCTCCCAGGAGCAT
ATCATGGGCACTTTCAAATTGGCCCTATATTAAGATGTTTCATGGCTTGT
GCTGTCTGGTGAACTGATCATGGGTATCTTTGC
back to top