FC931490

Overview
NameFC931490
Unique NameFC931490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAML_CAEEL (NRAMP-like transporter smf-1 OS=Caenorhabditis elegans GN=smf-1 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.132e-44
Identity = 100/243 (41.15%), Postives = 142/243 (58.44%), Query Frame = 3
Query:   72 QAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQAN------------------------NIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*DVSWLVLSGELIMGI 728
            QA+ VVG +IMPHN++LHSALV+SR +D   + RV EA +Y+++ES IAL +SF INLFV  VFA G Y    A+                         + +   G YL  ++G      ++IWGIG+ AAGQSST+TGTY GQF+M GF+ +   KW R LITR+ AI PT+++   +      L  +N++LN +Q +Q+PFALIP++   S   IM  F+ +    +  L+ S  LI+ I
Sbjct:  241 QAISVVGAVIMPHNLYLHSALVKSRRVDRKDRRRVAEANKYFTLESAIALFLSFFINLFVVAVFAHGLYQKTNADVREMCIARHDIPDADIFPNNTEPVEVDIYKGGIYLGCQFGA---IAMFIWGIGIFAAGQSSTMTGTYTGQFVMEGFVKIEWPKWKRVLITRAIAITPTLVLTF-YSQGVQNLTGMNDFLNCVQMIQLPFALIPIITFTSSRKIMHDFRSSKVFQIFALITSA-LILSI 478          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_STAES (Probable manganese transport protein mntH OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mntH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.345e-37
Identity = 87/221 (39.37%), Postives = 136/221 (61.54%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG-----GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*D-VSWL---VLSG 710
            A+G++G  IMPHN++LHS++VQSR  D        +A++Y +I+S I L ++F++N  + T+ A  F+GT+  +  G  +    L+ +       GG+   L+   + LLA+GQ+STITGT AGQ +M GFL L +  W+R LITRS A++P II  +VF  + + ++ L  +  V  S+ +PF+LIPL    S +++MG FK   + + +SWL   VLSG
Sbjct:  222 ALGIIGATIMPHNLYLHSSIVQSRKYDRHSIHEKAQAIKYATIDSNIQLSIAFVVNCLLLTLGAALFFGTKTEDLGGFYDLYLALKTEPALGATLGGIMSTLF--AVALLASGQNSTITGTLAGQIVMEGFLKLSIPNWLRRLITRSLAVIPVIICLIVFKGNTEKIEQLLVFSQVFLSIALPFSLIPLQLATSNQNLMGPFKNKTWINIISWLLIIVLSG 440          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_STAEQ (Probable manganese transport protein mntH OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mntH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.345e-37
Identity = 87/221 (39.37%), Postives = 136/221 (61.54%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG-----GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*D-VSWL---VLSG 710
            A+G++G  IMPHN++LHS++VQSR  D        +A++Y +I+S I L ++F++N  + T+ A  F+GT+  +  G  +    L+ +       GG+   L+   + LLA+GQ+STITGT AGQ +M GFL L +  W+R LITRS A++P II  +VF  + + ++ L  +  V  S+ +PF+LIPL    S +++MG FK   + + +SWL   VLSG
Sbjct:  222 ALGIIGATIMPHNLYLHSSIVQSRKYDRHSIHEKAQAIKYATIDSNIQLSIAFVVNCLLLTLGAALFFGTKTEDLGGFYDLYLALKTEPALGATLGGIMSTLF--AVALLASGQNSTITGTLAGQIVMEGFLKLSIPNWLRRLITRSLAVIPVIICLIVFKGNTEKIEQLLVFSQVFLSIALPFSLIPLQLATSNQNLMGPFKNKTWINIISWLLIIVLSG 440          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_STAS1 (Probable manganese transport protein mntH OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mntH PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 89/224 (39.73%), Postives = 140/224 (62.50%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYG--TEQANNI-GLVNAGQYLQEKYGGGLFPILY-IWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*D-VSWLVLSGELIMGIF 731
            A+G++G  IMPHN++LHS++VQSR  D +       A++Y +++S I L ++F++N  +  + A  F+G  TEQ      L NA Q  Q   G  L  I+  ++ I LLA+GQ+STITGT AGQ +M GF+NL++  W+R LITR  AI+P II  +VF+++E  ++ L  +  V  S+ +PF+LIPL    + + +MG FK  L+ + +SW ++    I+ I+
Sbjct:  215 ALGIIGATIMPHNLYLHSSIVQSRMYDRNSIQSKAHAIKYATMDSNIQLSIAFIVNCLLLVLGAALFFGVNTEQLGGFYDLYNALQN-QPLLGASLGAIMSTLFAIALLASGQNSTITGTMAGQIVMEGFINLKIPNWLRRLITRLIAILPIIICLIVFNSNEAKMEQLLVFSQVFLSLALPFSLIPLQLSTNDKRLMGQFKNKLWVNIISWCLIIILSILNIY 437          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM6_ARATH (Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.935e-35
Identity = 97/226 (42.92%), Postives = 144/226 (63.72%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVF-----AKGFYGTEQANNIGL-VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTS-EDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLAL-Y*DVSWLVLSGELIMGI 728
            A+ ++G ++MPHN+FLHSALV SR I  S  G ++EA RYY IES +AL+V+F+IN+ V +V      A      ++A+   L +N   +L     G     L+   I LLA+GQSSTITGTYAGQ++M GFL+LRL+ W+R  +TR  AI+P++IVAL+  ++    L ++    +++ S ++PFAL+PLL   S +  MG+   +L    V+W++  G LIMGI
Sbjct:  220 AISLLGAMVMPHNLFLHSALVLSRKIPRSVTG-IKEACRYYLIESGLALMVAFLINVSVISVSGAVCNASDLSPEDRASCQDLDLNKASFLLRNVVGKWSSKLF--AIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNFLTRCLAIIPSLIVALIGGSAGAGKLIII---ASMILSFELPFALVPLLKFTSSKTKMGSHANSLVISSVTWII--GGLIMGI 437          

HSP 2 Score: 21.557 bits (44), Expect = 2.935e-35
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    4 TKPSGSELLIGILVPKL 54
            +KP   E+L G+ VP+L
Sbjct:  195 SKPDPKEVLYGLFVPQL 211          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_STAHJ (Probable manganese transport protein mntH OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mntH PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.979e-35
Identity = 77/201 (38.31%), Postives = 123/201 (61.19%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFP---ILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFK 668
            A+G++G  IMPHN++LHS++VQSR  +        +A+++ +I+S I L ++F++N  +  + A  FYG    N  G  +  Q L+ +   G+     +  ++ I LLA+GQ+STITGT AGQ +M GFL L +  WMR L+TRS A++P ++  ++F  +E  ++ L  +  V  S+ +PF+LIPL    S E +MG FK
Sbjct:  215 ALGIIGATIMPHNLYLHSSIVQSRKYNRHSFTEKAQAIKFATIDSNIQLSIAFIVNCLLLVLGAALFYGVNSNNIGGFYDLYQALRTQPVLGVVMGSIMSTLFAIALLASGQNSTITGTLAGQIVMEGFLKLSIPNWMRRLVTRSLAVIPVLLCLVIFRGNESKMEQLLVFSQVFLSIALPFSLIPLQLATSNEKLMGPFK 415          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM1_ARATH (Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.000e-34
Identity = 97/227 (42.73%), Postives = 146/227 (64.32%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVF-----AKGFYGTEQANNIGL-VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTS-EDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTF--KLALY*DVSWLVLSGELIMGI 728
            A+ ++G ++MPHN+FLHSALV SR I  S  G ++EA R+Y IES +AL+V+F+IN+ V +V      A      ++AN   L +N   +L     G     L+   I LLA+GQSSTITGTYAGQ++M GFL+LRL+ W+R L+TR  AI+P++IVAL+  ++    L ++    +++ S ++PFAL+PLL   S +  MG+    +A+   ++W++  G LIMGI
Sbjct:  228 AISLLGAMVMPHNLFLHSALVLSRKIPRSASG-IKEACRFYLIESGLALMVAFLINVSVISVSGAVCNAPNLSPEDRANCEDLDLNKASFLLRNVVGKWSSKLF--AIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIII---ASMILSFELPFALVPLLKFTSCKTKMGSHVNPMAIT-ALTWVI--GGLIMGI 445          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_LISW6 (Probable manganese transport protein mntH OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mntH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 82/220 (37.27%), Postives = 136/220 (61.82%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*D-VSWLVLSGELIMGIF 731
            A+G++G  +MPHN++LHS++VQ+R    +K+G+ +EA+R+  I+ST +L ++ +IN  +  + A  FY T Q N  G+ +A + L    G  +   ++   + LLA+GQ+ST+TGT AGQ +M GFLN+RLK  +R L+TR  AIVP +I+  ++  +   ++ L  +  V+ S+Q+ FA+IPL+   S +  MG F    +   +SW V     I+ I+
Sbjct:  225 ALGILGATVMPHNLYLHSSIVQTRQYARTKEGK-KEAIRFSFIDSTFSLTIALLINASILILAAAAFYTTGQHNVAGIEDAYKLLNPTLGSSIASTVF--AVALLASGQNSTLTGTLAGQIVMEGFLNIRLKPVVRRLLTRVLAIVPAVIITALYGANG--INELLIFSQVILSMQLSFAVIPLVMFTSDKEKMGEFVNPSWLKIISWAVAIFIAILNIY 439          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_LISMO (Probable manganese transport protein mntH OS=Listeria monocytogenes GN=mntH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 81/220 (36.82%), Postives = 136/220 (61.82%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*D-VSWLVLSGELIMGIF 731
            A+G++G  +MPHN++LHS++VQ+R    +K+G+ +EA+R+  I+ST +L ++ +IN  +  + A  FY T Q N  G+ +A + L    G  +   ++   + LLA+GQ+ST+TGT AGQ +M GFLN+RLK  +R L+TR  AIVP +I+  ++  +   ++ L  +  V+ S+Q+ FA+IPL+   S +  MG F    +   +SW V     ++ I+
Sbjct:  225 ALGILGATVMPHNLYLHSSIVQTRQYARTKEGK-KEAIRFSFIDSTFSLTIALLINASILILAAAAFYTTGQHNVAGIEDAYKLLNPTLGSSIASTVF--AVALLASGQNSTLTGTLAGQIVMEGFLNIRLKPVVRRLLTRVLAIVPAVIITALYGANG--INELLIFSQVILSMQLSFAVIPLVMFTSDKQKMGEFVNPTWLKIISWAVAIFIAVLNIY 439          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: MNTH_LISMH (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=mntH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 81/220 (36.82%), Postives = 136/220 (61.82%), Query Frame = 3
Query:   75 AVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*D-VSWLVLSGELIMGIF 731
            A+G++G  +MPHN++LHS++VQ+R    +K+G+ +EA+R+  I+ST +L ++ +IN  +  + A  FY T Q N  G+ +A + L    G  +   ++   + LLA+GQ+ST+TGT AGQ +M GFLN+RLK  +R L+TR  AIVP +I+  ++  +   ++ L  +  V+ S+Q+ FA+IPL+   S +  MG F    +   +SW V     ++ I+
Sbjct:  225 ALGILGATVMPHNLYLHSSIVQTRQYARTKEGK-KEAIRFSFIDSTFSLTIALLINASILILAAAAFYTTGQHNVAGIEDAYKLLNPTLGSSIASTVF--AVALLASGQNSTLTGTLAGQIVMEGFLNIRLKPVVRRLLTRVLAIVPAVIITALYGANG--INELLIFSQVILSMQLSFAVIPLVMFTSDKQKMGEFVNPTWLKIISWAVAIFIAVLNIY 439          
The following BLAST results are available for this feature:
BLAST of FC931490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NRAML_CAEEL2.132e-4441.15NRAMP-like transporter smf-1 OS=Caenorhabditis ele... [more]
MNTH_STAES7.345e-3739.37Probable manganese transport protein mntH OS=Staph... [more]
MNTH_STAEQ7.345e-3739.37Probable manganese transport protein mntH OS=Staph... [more]
MNTH_STAS18.121e-3639.73Probable manganese transport protein mntH OS=Staph... [more]
NRAM6_ARATH2.935e-3542.92Metal transporter Nramp6 OS=Arabidopsis thaliana G... [more]
MNTH_STAHJ8.979e-3538.31Probable manganese transport protein mntH OS=Staph... [more]
NRAM1_ARATH2.000e-3442.73Metal transporter Nramp1 OS=Arabidopsis thaliana G... [more]
MNTH_LISW64.456e-3437.27Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMO4.456e-3436.82Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMH4.456e-3436.82Probable manganese transport protein mntH OS=Liste... [more]

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Properties
Property NameValue
Genbank descriptionC34105F09EF PostHarvP1 Citrus clementina cDNA clone C34105F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931490 ID=FC931490; Name=FC931490; organism=Citrus clementina; type=EST; length=733bp
GAGACCAAGCCAAGTGGCTCTGAGCTTCTTATTGGCATTTTGGTTCCAAA
ACTCAGTTCCAAACAATACAGCAGGCTGTTGGAGTTGTGGGCTGTATTAT
CATGCCTCATAATGTGTTTTTGCACTCCGCTCTTGTGCAATCAAGAGATA
TTGATAACAGTAAGAAAGGCCGTGTCCAAGAAGCTCTCAGATACTATTCC
ATTGAGTCTACTATTGCCCTTGTTGTTTCATTCATGATCAATCTTTTTGT
TACAACTGTTTTTGCAAAGGGGTTTTATGGTACTGAACAGGCCAATAACA
TTGGCCTCGTAAATGCTGGCCAGTACCTTCAAGAGAAGTACGGAGGTGGA
CTTTTCCCAATTTTATATATCTGGGGTATTGGGTTATTAGCAGCTGGACA
GAGTAGCACCATTACCGGCACTTATGCTGGGCAGTTTATCATGGGAGGTT
TCCTAAATTTGAGGTTGAAAAAATGGATGAGGGCACTGATAACACGGAGC
TGTGCCATTGTCCCAACTATTATTGTTGCACTTGTTTTTGATACCTCTGA
AGACATGTTAGATGTTTTAAATGAATGGCTAAATGTGCTACAGTCAGTTC
AGATCCCTTTTGCTCTTATCCCACTTTTATATTTGGTCTCCCAGGAGCAT
ATCATGGGCACTTTCAAATTGGCCCTATATTAAGATGTTTCATGGCTTGT
GCTGTCTGGTGAACTGATCATGGGTATCTTTGC
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