FC931492

Overview
NameFC931492
Unique NameFC931492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: DNAK_BIFLI (Chaperone protein dnaK OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=dnaK PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 84/229 (36.68%), Postives = 128/229 (55.90%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVDL------GNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A  +LSS TS  I++        G  + + + +TR  FEE+   +  +C +     LHDA + + D++ V+LVGG + +P V++L++      E  + +NP E    GAA++  V  G        D+L I VTPL +GI   G     +I RNT +P ++  VF+T  DNQ   LI VY+GE E   +N  LG F++TGI P+P+GVP+I V  DIDA+ ++ V
Sbjct:  242 AAEQAKKELSSSTSTSISMQYLAMTPDGTPVHLDETLTRAHFEEMTSDLLGRCRTPFNNVLHDAGISVSDIDHVVLVGGSTRMPAVKDLVKELTGGKEANQSVNPDEVVAVGAAVQSGVIKG-----DRKDVLLIDVTPLSLGIETKGGIMTKLIDRNTAIPTKRSEVFSTAEDNQPSVLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHV 465          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 81/216 (37.50%), Postives = 133/216 (61.57%), Query Frame = 3
Query:   30 LSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            LSS+  V++ ++ L +G+ +S+ +TR  FEE+N  +F K    + + + DA ++   +++++LVGG + IPKV+ L++   +  E  +G+NP EA   GAA++G + SG        D+L + V PL +GI   G     +IPRNT +P +K  VFTT +D Q+   I V+EGE    ++  LLG F +TG+PP+P+G P+I V  ++DA+ +L V
Sbjct:  305 LSSQHQVRVEIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGD-ETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGVPPAPRGTPQIEVTFEVDANGILNV 519          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: DNAK_BIFLO (Chaperone protein dnaK OS=Bifidobacterium longum GN=dnaK PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 84/229 (36.68%), Postives = 127/229 (55.46%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVDL------GNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A  +LSS TS  I++        G  + + + +TR  FEE+   +  +C +     LHDA + + D++ V+LVGG + +P V+ L++      E  + +NP E    GAA++  V  G        D+L I VTPL +GI   G     +I RNT +P ++  VF+T  DNQ   LI VY+GE E   +N  LG F++TGI P+P+GVP+I V  DIDA+ ++ V
Sbjct:  242 AAEQAKKELSSSTSTSISMQYLAMTPDGTPVHLDETLTRAHFEEMTSDLLGRCRTPFNNVLHDAGISVSDIDHVVLVGGSTRMPAVKELVKELTGGKEANQSVNPDEVVAVGAAVQSGVIKG-----DRKDVLLIDVTPLSLGIETKGGIMTKLIDRNTAIPTKRSEVFSTAEDNQPSVLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHV 465          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: DNAK_BIFLD (Chaperone protein dnaK OS=Bifidobacterium longum (strain DJO10A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 84/229 (36.68%), Postives = 127/229 (55.46%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVDL------GNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A  +LSS TS  I++        G  + + + +TR  FEE+   +  +C +     LHDA + + D++ V+LVGG + +P V+ L++      E  + +NP E    GAA++  V  G        D+L I VTPL +GI   G     +I RNT +P ++  VF+T  DNQ   LI VY+GE E   +N  LG F++TGI P+P+GVP+I V  DIDA+ ++ V
Sbjct:  242 AAEQAKKELSSSTSTSISMQYLAMTPDGTPVHLDETLTRAHFEEMTSDLLGRCRTPFNNVLHDAGISVSDIDHVVLVGGSTRMPAVKELVKELTGGKEANQSVNPDEVVAVGAAVQSGVIKG-----DRKDVLLIDVTPLSLGIETKGGIMTKLIDRNTAIPTKRSEVFSTAEDNQPSVLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHV 465          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: HSP75_ASHGO (Heat shock protein SSB OS=Ashbya gossypii GN=SSB PE=3 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 85/224 (37.95%), Postives = 127/224 (56.70%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A   LSS T   + VD L  G     ++TR  FE++N  +F+     + Q L DA++    +++V+LVGG + IPKV+ L+    +  +L + INP EA   GAA++ A+ +G N      DLL + V PL +G+   G+ F  +IPRNTT+P  K   FTTV D Q+     VY+GE    ++N LLG F + GIPP P G P +    ++DA+ +L+V
Sbjct:  269 AAERAKRTLSSVTQTTVEVDSLFEGEDFETSITRARFEDINAALFKSTLEPVEQVLKDAQISKSQIDEVVLVGGSTRIPKVQKLLSDFFEGKQLEKSINPDEAVAYGAAVQAAILTGSNLSDDTKDLLLLDVAPLSLGVAMQGDVFACVIPRNTTVPTIKRRTFTTVHDGQTTVTFPVYQGERVNCKDNTLLGEFDLKGIPPLPAGEPVLEAIFEVDANGILKV 492          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: HSP75_ZYGRC (Heat shock protein SSB OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=SSB PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 87/224 (38.84%), Postives = 129/224 (57.59%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A   LSS T   I VD L NG     ++TR  FE++N  +F+     + Q L DAKV   ++++V+LVGG + IPKV+ ++    +  +L + INP EA   GAA++GA+ +G +      DLL + V PL +G+   G+ F  ++PRNTT+P  K   FTTV D+QS     VY+GE    +EN LLG F +  IPP   G P +    ++DA+ +L+V
Sbjct:  269 ACERAKRTLSSVTQTTIEVDSLYNGDDFETSITRARFEDLNSSLFKSTLEPVEQVLKDAKVPKTEIDEVVLVGGSTRIPKVQKMLSDFFEGKQLEKSINPDEAVAYGAAVQGAILTGQSTSEDTKDLLLLDVAPLSLGVGMQGDIFGIVVPRNTTVPTIKRRTFTTVADHQSTVQFPVYQGERVNCKENTLLGEFDLKNIPPMQAGEPVLEAIFEVDANGILKV 492          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 89/225 (39.56%), Postives = 134/225 (59.56%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A   LSS T   + +D L  G+    ++TR  FEE+   +F      + + L DAK++   ++D++LVGG + IPKV+ L+Q      +L + INP EA   GAA++ A+  G  D   N+ DLL + V PL +G+   G     +I RN+T+P ++  +FTT  DNQ   LI VYEGE    ++N+LLG F+++GIPP+P GVP+I V  +IDA+ +L V
Sbjct:  264 ACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMG--DKSENVQDLLLLDVAPLSLGLETPGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAP-GVPQIEVTFEIDANGILNV 485          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 84/222 (37.84%), Postives = 132/222 (59.46%), Query Frame = 3
Query:   12 QDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            + A   LS++   ++ ++ L +G   S+ +TR +FEE+N  +F      + + L D+ ++ +D+++++LVGG + IPKV+ LI+      E   GINP EA   GAA++G V SG  D     +++ + V PL +GI   G     +I RNT +P +K  VF+T  DNQ    I V+EGE    ++NH LG F +TGIPP+P+GVP+I V  +ID + +L V
Sbjct:  298 EKAKRALSTQHQTKVEIESLFDGEDFSETLTRAKFEELNMDLFRATLKPVQKVLEDSDLKKDDVHEIVLVGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGEEDTG---EIVLLDVNPLTMGIETVGGVMTKLISRNTVIPTKKSQVFSTAADNQPTVTIQVFEGERPMTKDNHQLGKFDLTGIPPAPRGVPQIEVTFEIDVNGILHV 516          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: HSP75_KLULA (Heat shock protein SSB OS=Kluyveromyces lactis GN=SSB PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 84/224 (37.50%), Postives = 128/224 (57.14%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A   LSS     + VD L +G      +TR  FE++N  +F+     + Q L DAK+    +++V+LVGG + IPKV+ L+    +  +L + INP EA   GAA++GA+ +G +      DLL + V PL +G+   G+ F  ++PRNTT+P  K   FTTV D+Q+     VY+GE    +EN LLG F + G+PP P G P +    ++DA+ +L+V
Sbjct:  269 AAERAKRTLSSVAQTTVEVDSLFDGEDFEATITRARFEDINAALFKSTLEPVEQVLKDAKIAKSQIDEVVLVGGSTRIPKVQKLLSDFFEGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMAGDVFGVVVPRNTTVPTIKRRTFTTVADHQTTVTFPVYQGERVNCKENTLLGEFDLKGVPPMPAGEPVLEAIFEVDANGILKV 492          
BLAST of FC931492 vs. ExPASy Swiss-Prot
Match: HSP75_CANGA (Heat shock protein SSB OS=Candida glabrata GN=SSB1 PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 86/224 (38.39%), Postives = 127/224 (56.70%), Query Frame = 3
Query:    6 ATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLIQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 674
            A + A   LSS T   + VD L  G     ++TR  FE++N  +F+     + Q L DAK+    +++V+LVGG + IPKV+ L+       +L + INP EA   GAA++GA+ +G +      DLL + V PL +G+   G+ F  ++PRNTT+P  K   FTTV DNQ+     VY+GE    +EN LLG F +  IPP P G P +    ++DA+ +L+V
Sbjct:  269 AAERAKRTLSSVTQTTVEVDSLFEGEDFEASLTRARFEDLNAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLSDYFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDLLLLDVAPLSLGVGMQGDIFGVVVPRNTTVPTIKRRTFTTVGDNQTTVQFPVYQGERVNCKENTLLGEFDLKNIPPMPAGEPVLEAIFEVDANGILKV 492          
The following BLAST results are available for this feature:
BLAST of FC931492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BIFLI4.673e-3836.68Chaperone protein dnaK OS=Bifidobacterium longum s... [more]
BIP2_ARATH4.673e-3837.50Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
DNAK_BIFLO6.103e-3836.68Chaperone protein dnaK OS=Bifidobacterium longum G... [more]
DNAK_BIFLD6.103e-3836.68Chaperone protein dnaK OS=Bifidobacterium longum (... [more]
HSP75_ASHGO7.970e-3837.95Heat shock protein SSB OS=Ashbya gossypii GN=SSB P... [more]
HSP75_ZYGRC1.360e-3738.84Heat shock protein SSB OS=Zygosaccharomyces rouxii... [more]
HSP71_CERAE1.360e-3739.56Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HSP7C_CAEBR1.776e-3737.84Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
HSP75_KLULA1.776e-3737.50Heat shock protein SSB OS=Kluyveromyces lactis GN=... [more]
HSP75_CANGA1.776e-3738.39Heat shock protein SSB OS=Candida glabrata GN=SSB1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105F11EF PostHarvP1 Citrus clementina cDNA clone C34105F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931492 ID=FC931492; Name=FC931492; organism=Citrus clementina; type=EST; length=697bp
GGGTTGCTACCCAGGATGCAATCCATAAACTATCATCAGAGACGAGTGTT
CAGATTAATGTCGACTTGGGAAATGGATTAAAAGTATCAAAAAATGTAAC
GCGAGAGGAGTTTGAGGAAGTAAACCAAAAGGTATTTGAGAAATGTGGGA
GCCTTATAACCCAGTGCTTGCATGATGCGAAGGTGGAGATAGAGGATCTG
AATGATGTAATACTCGTGGGTGGCTGCTCATATATTCCAAAAGTAAGGAA
TCTTATCCAGAGTACATGCAAAAAAGTAGAACTCTATGAGGGTATTAACC
CATTGGAAGCAGCAGTTAGTGGGGCAGCTCTGGAAGGAGCAGTGACTTCA
GGCATTAACGATCCATTTGGGAACCTGGACCTGTTAACCATCCAAGTCAC
ACCACTTGGCATTGGTATACGAGCTAATGGCAACAACTTTGTACCCATCA
TTCCTAGAAACACCACGATGCCAGCACGGAAAGATCTGGTCTTCACAACA
GTTCGCGACAACCAGTCTGAGGCGCTGATTATTGTTTATGAAGGTGAAGG
GGAGAAGGTAGAAGAGAATCATCTTCTAGGCTATTTCAAGATAACAGGAA
TTCCTCCCTCTCCCAAAGGAGTACCAGAAATAAATGTGTGCATGGACATT
GATGCCTCGAGTGTGCTGAGAGTTTTGGTTGGGGTCATTATGCCTGG
back to top