FC931494

Overview
NameFC931494
Unique NameFC931494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11304 contig Ccv1_Contig11304:656..1415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_DANRE (Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_CHICK (Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_BOVIN (Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CK2B_DICDI (Casein kinase II subunit beta OS=Dictyostelium discoideum GN=csnk2b PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 558
            GLSS V +YD AL +ILD  S   D  +E+Q E +E +A++LYGLIH RYILT KG+A M                              EK+K  +FGRCPRV+C  QP LPVG +D+    TVK+YCP+C DI+ P+ +   +IDGAYFGTTFPHL L+TY  L P K  Q Y+P+++GFK+HK
Sbjct:   52 GLSSLVQFYDSALGIILD--SDPDDPLSEDQQEALERSADILYGLIHARYILTPKGLAHMH-----------------------------EKFKKAEFGRCPRVFCQNQPVLPVGLADMQGVDTVKVYCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTKPPQQYIPKIYGFKIHK 206          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_SCHPO (Casein kinase II subunit beta OS=Schizosaccharomyces pombe GN=ckb1 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 89/185 (48.11%), Postives = 114/185 (61.62%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GLS +VP+Y  +LDLILDV     D+  E Q+E VE++A  LYGLIH RYILT++G+  M                             LEKYK  DFG CPRV C GQP LPVG SDI  + +VK+YCP+CED+Y P+S+   +IDGAYFGT+FPH+    Y  L   K+ + Y+PR+FGFK+H
Sbjct:   45 GLSHEVPHYSQSLDLILDVLDP--DLPEEVQDE-VEASARHLYGLIHARYILTAQGLYKM-----------------------------LEKYKKCDFGHCPRVLCNGQPMLPVGLSDIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRIFGFKVH 197          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_DROME (Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.257e-42
Identity = 85/185 (45.95%), Postives = 110/185 (59.46%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP Y  ALD+ILD+E          Q+++ E AAEMLYGLIH RYILT++G+A M+                             EKY+  DFG CPRVYC  QP LP+G SDIP  + VK YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++ T  +VPR++GFK+H
Sbjct:   38 GLNEQVPNYRQALDMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMI-----------------------------EKYQTGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIH 193          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_SPOFR (Casein kinase II subunit beta OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.541e-40
Identity = 81/185 (43.78%), Postives = 111/185 (60.00%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++LVE A+E+LYGLIH RYILT++G+  M                             LEK++  DFG CPRVYC  QP LP+G SD+P  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDDDLDDNPNQSDLVEQASEILYGLIHARYILTNRGIGQM-----------------------------LEKFQAGDFGHCPRVYCECQPMLPLGLSDVPGEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPEYRPKRPASQFVPRLYGFKIH 193          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_CAEEL (Casein kinase II subunit beta OS=Caenorhabditis elegans GN=kin-10 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.629e-40
Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQN-ELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP Y  ALD+ILD+E    D+     N +LVE AAEMLYGLIH RYILT++G++ MV                             EK++++DFG CPRVYC  QP LP+G SD+P  + VK+YCP+C D++ PRS    + DG+YFGT FPH+    +  L+P++    +VP+++GFK+H
Sbjct:   38 GLNEQVPKYRQALDMILDLEPD--DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMV-----------------------------EKWRDHDFGVCPRVYCENQPMLPIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVTQFVPKLYGFKIH 192          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2C_NEUCR (Casein kinase II subunit beta-2 OS=Neurospora crassa GN=ckb-2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.796e-39
Identity = 80/185 (43.24%), Postives = 106/185 (57.30%), Query Frame = 1
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+++V YY YALDLI DV     D   ++  E +E +A  LYGL+H RYI+T++G+  M                              EKYK  DFG+CPRV C   P LP+G SD+P S  VK+YC +CEDIY P+S     IDGAYFGT+F ++F   Y  L P K+ + Y+PR +GFK+H
Sbjct:   45 GLNTEVQYYQYALDLITDVFDLDCD---DDMRETIEKSARHLYGLVHARYIVTTRGLQKM-----------------------------FEKYKKADFGKCPRVMCSSHPLLPMGLSDVPNSKPVKLYCARCEDIYNPKSSRHAAIDGAYFGTSFHNIFFQVYPTLVPAKSVERYIPRCYGFKVH 197          
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2C_DROME (Casein kinase II subunit beta' OS=Drosophila melanogaster GN=CkIIbeta2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.343e-35
Identity = 74/184 (40.22%), Postives = 103/184 (55.98%), Query Frame = 1
Query:    4 LSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            L S V  Y  AL++ILD+    G    +     +E++AE LYGLIH R+ILT++G+  M                             L+KY   +FG CPR +C  QP LP+G SD P    V+IYCPKC D+Y P++    N+DGA+FGT FPH+F M     +P++A Q +VPR++GFK+H
Sbjct:   39 LDSNVKNYKCALEVILDLNP--GSASEDPAEPELEASAEKLYGLIHARFILTNRGIELM-----------------------------LDKYNKGEFGTCPRAFCHSQPVLPIGLSDNPGEDMVRIYCPKCNDVYIPKASRHSNLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIH 191          
The following BLAST results are available for this feature:
BLAST of FC931494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CSK2B_DANRE1.945e-4346.49Casein kinase II subunit beta OS=Danio rerio GN=cs... [more]
CSK2B_CHICK1.945e-4346.49Casein kinase II subunit beta OS=Gallus gallus GN=... [more]
CSK2B_BOVIN1.945e-4346.49Casein kinase II subunit beta OS=Bos taurus GN=CSN... [more]
CK2B_DICDI1.945e-4347.85Casein kinase II subunit beta OS=Dictyostelium dis... [more]
CSK2B_SCHPO3.668e-4248.11Casein kinase II subunit beta OS=Schizosaccharomyc... [more]
CSK2B_DROME6.257e-4245.95Casein kinase II subunit beta OS=Drosophila melano... [more]
CSK2B_SPOFR1.541e-4043.78Casein kinase II subunit beta OS=Spodoptera frugip... [more]
CSK2B_CAEEL2.629e-4044.09Casein kinase II subunit beta OS=Caenorhabditis el... [more]
CSK2C_NEUCR3.796e-3943.24Casein kinase II subunit beta-2 OS=Neurospora cras... [more]
CSK2C_DROME4.343e-3540.22Casein kinase II subunit beta' OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC34105G01EF PostHarvP1 Citrus clementina cDNA clone C34105G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931494 ID=FC931494; Name=FC931494; organism=Citrus clementina; type=EST; length=760bp
GGGTTGAGCAGTCAAGTTCCATACTATGATTATGCTCTTGATTTGATATT
GGATGTTGAATCTTCTCATGGTGATATGTTCACTGAAGAACAGAATGAAC
TGGTGGAATCAGCAGCAGAGATGCTGTATGGTCTGATTCATGTACGGTAC
ATCCTTACTAGCAAGGGAATGGCTGCAATGGTAAAATTCAGAGTTTGATC
ATCTGTACGGGTGCATTGTTAATTTCCCTTTTTATTGGCAATTATGTTGT
GTTGGGAACTTTTGCAGTTAGAGAAGTACAAAAACTATGATTTTGGGAGA
TGCCCAAGAGTATACTGCTGTGGGCAACCCTGCCTTCCTGTCGGTCAATC
AGACATCCCTCGTTCAAGTACTGTTAAAATATACTGCCCGAAATGTGAAG
ATATATATTATCCTCGGTCCAAGTACCAAGGCAATATCGATGGTGCTTAT
TTTGGGACTACCTTTCCTCACCTATTTCTAATGACATATGGACACTTAAA
GCCACAAAAGGCTACACAGAGCTATGTCCCAAGGGTTTTTGGTTTCAAGC
TTCACAAGCCCTAACATTGGAGTTGCAAGTTGCGTTAGTGTTGAGAATTC
CGGTGGCAGTGCATTTCACATTTTCTCTTTTGCCTGCCTCTCTACTGAAA
GTATGCATGGCCCCCACAAAGTGAGGTAAGCGGGGTACTTCTGAATATAT
TACAATTGATCGCATATGGATATGTTTAATGCTAGATGGTCTGGTTGAGT
GAAACCTATC
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