FC931496

Overview
NameFC931496
Unique NameFC931496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NIA_ASPNG (Nitrate reductase [NADPH] OS=Aspergillus niger GN=niaD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  256 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRA--PLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE------GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMK-------KHIG---MIAGGTGITPMLQVIEAILKNQ 681
            L    W    L     VS ++ +F F      + LGL +   ++ +   P  ++A      ++R YTPISDT  +G  DLL+K+Y +      GKM+     L  G  ++ KGP  +  Y  N K       +H+    MI GGTGITP+ QV+ A+++++
Sbjct:  612 LQSKSWTKATLVKRTDVSWDTRIFTFQLQHDKQTLGLPIGQHLMIKVADPTSKEA------IIRSYTPISDTNQEGTMDLLVKIYFDTPTVKGGKMTMALEKLALGSEIDCKGPTGRFEYLGNGKILVSGKERHVSSFKMICGGTGITPIFQVLRAVMQDK 766          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NIA_PHYIN (Nitrate reductase [NADPH] OS=Phytophthora infestans GN=NIAA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 52/157 (33.12%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  304 VSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS--DTEAKGHFDLLIKVY--------PEGKM-SQHFASLKPGDVVEVKGPIEKLRY---------SPNMKKH-IGMIAGGTGITPMLQVIEAILKNQMTHSGVTAV 708
            VSH++ +F+F+      +LGL + + +   A +      N K  VR YTPIS  + E +G    LIKVY        PEG + SQ+   L  G  +++KGP+    Y         + N   +  G +AGGTGITP+ QV+ AIL++    + V  +
Sbjct:  650 VSHDARIFKFALPAKDLRLGLPIGNHVFLYAKI------NGKTAVRAYTPISSENDEDRGFVSFLIKVYFAGDNPVHPEGGLFSQYLDGLHLGQQIQIKGPLGHFTYYGDGNFSLETTNFHAYKFGFVAGGTGITPVYQVMRAILEDAKDQTKVALI 800          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NIA_USTMA (Nitrate reductase [NADPH] OS=Ustilago maydis GN=NAR1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 51/169 (30.18%), Postives = 78/169 (46.15%), Query Frame = 1
Query:  256 LNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY-------------PEGKMSQHFASL---KPGD--VVEVKGPI--------EKLRYSP----NMKKHIGMIAGGTGITPMLQVIEAI 669
            L+P KW   +L     +S ++ +FRF+      +LGL V   +  R        G T+ V R YTP S    +G  D+LIKVY               GKM+     +    P D   +E+KGP+        +++R+ P       + + MIAGG+GITP+   ++AI
Sbjct:  685 LDPKKWRATRLVSKQIISPDARIFRFALGSEDQELGLPVGQHVFVRVRSKNARTGETEMVQRAYTPYSGNTQRGFLDILIKVYFPSDAAATSAPAFEGGKMTMLLEKIDVSSPSDDLTIELKGPLGSFTYLGQQQIRWKPASAVRRVRKLAMIAGGSGITPIWSTLKAI 853          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NIA_NEUCR (Nitrate reductase [NADPH] OS=Neurospora crassa GN=nit-3 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 51/160 (31.87%), Postives = 75/160 (46.88%), Query Frame = 1
Query:  250 IALNPDKWIGFKLQDTARVSHNSHLFRFSFD-PSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISD-TEAKGHFDLLIKVY--------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS----------PNMKKHIGMIAGGTGITPMLQVIEAI 669
            I L    W    L     VS ++ +F F+   P+  +GL V   ++ R P   D    T+ ++R YTPISD T  +G   +L+K+Y          G+M+Q   +L  G  VE KGP+ K  Y               K   M+ GG+G+TP+ QV EA+
Sbjct:  716 IFLQSKTWNSAILTFKESVSPDTKIFHFALSHPAQSIGLPVGQHLMMRLP---DPAKPTESIIRAYTPISDGTLERGTLRVLVKIYYASPTEDIKGGQMTQALDALALGKAVEFKGPVGKFVYQGRGVCSVNGRERKVKRFVMVCGGSGVTPIYQVAEAV 872          
The following BLAST results are available for this feature:
BLAST of FC931496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
NIA_ASPNG7.082e-1331.06Nitrate reductase [NADPH] OS=Aspergillus niger GN=... [more]
NIA_PHYIN1.744e-1133.12Nitrate reductase [NADPH] OS=Phytophthora infestan... [more]
NIA_USTMA2.278e-1130.18Nitrate reductase [NADPH] OS=Ustilago maydis GN=NA... [more]
NIA_NEUCR2.278e-1131.88Nitrate reductase [NADPH] OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34105G03EF PostHarvP1 Citrus clementina cDNA clone C34105G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931496 ID=FC931496; Name=FC931496; organism=Citrus clementina; type=EST; length=710bp
GACTTTTCTTTGCTTTGCTTCTCTCTCCAACATTAGAAAATGGCTACGAC
CTTCTTCAGAAGACTGGCTAAAGCTACTCCAATTGCATTCAACGAGGCAT
TTGGAGGGCAACCCAAGTCCGATTTCAACAAATTTCGATTTCCCTTTGGA
GCAATCGCTGCTGTTGCTGGTGGAGTCTCCTATTACTGTTACTTTTCATC
CCCAAATTTGGTTCATCTAGATCAAATCAATGAAGAGACGGGTCCAAAAA
TTGCTCTCAATCCGGACAAGTGGATTGGATTTAAGTTGCAAGACACTGCA
AGGGTAAGCCACAATAGTCATTTGTTCAGGTTTTCATTTGATCCATCTGC
CAAGTTGGGTTTGGATGTTGCTTCATGCATCCTTACAAGGGCTCCATTAG
GACAAGATGCTGAAGGAAATACAAAATATGTTGTACGGCCGTATACTCCT
ATATCAGATACAGAAGCTAAGGGACACTTTGACTTGTTAATTAAGGTTTA
TCCTGAGGGTAAAATGAGTCAGCATTTTGCTAGCTTAAAACCAGGGGATG
TAGTTGAAGTGAAAGGACCCATTGAAAAGCTCCGATACTCTCCCAATATG
AAGAAACACATCGGCATGATAGCTGGTGGCACAGGTATAACTCCTATGCT
TCAGGTAATTGAGGCTATACTGAAGAATCAGATGACACACTCAGGTGTCA
CTGCTGTATG
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