FC931496

Overview
NameFC931496
Unique NameFC931496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NCB5R_SCHPO (NADH-cytochrome b5 reductase 1 OS=Schizosaccharomyces pombe GN=cbr1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 65/146 (44.52%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  265 DKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQ------DAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 678
            DK   F+L D A ++HN+ ++RF   P A   LGL          P+GQ      D +G  K   R YTP+S    KG+FDLL+K YP GK+S+ F+ LK GD + V+GP    ++   + +H GMIAGGTGITPMLQ+I A+L N
Sbjct:   59 DKIQQFELSDKAVLNHNTAIYRFRL-PRANDVLGL----------PIGQHLKVFVDVDG--KEYSRSYTPLSSDADKGYFDLLVKSYPNGKVSKKFSELKIGDTIGVRGPKGNWKHRTGLARHFGMIAGGTGITPMLQIIRAVLSN 191          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NCB5R_MORAP (NADH-cytochrome b5 reductase 1 OS=Mortierella alpina GN=CBR1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  256 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD----AEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 678
            ++P ++  FKL D    S N+ +++F+      L            P+GQ     A  N K + R YTP S ++  GHF L IK YP+G +S+ F+ L  GD +  +GP  +  Y+PNM + IGMIAGGTG+TPMLQ+I AI+KN
Sbjct:   53 MDPKEYRKFKLVDKVHCSPNTAMYKFALPHEDDL---------LNLPIGQHISIMANINGKDISRSYTPTSSSDDVGHFVLCIKSYPQGNISKMFSELSIGDSINARGPKGQFSYTPNMCRAIGMIAGGTGLTPMLQIIRAIVKN 188          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NCB5R_VANPO (NADH-cytochrome b5 reductase 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CBR1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 1
Query:  268 KWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS-DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNQMTHSGVTAV 708
            +++ F L    +++ NS ++RF        LGL +   I  +A +      +   VVR YTPIS D+EAKG+F+LLIK Y +GK+S+ F SLK GD ++V+GP     Y+    KH+ MIAGG+G+TPM Q+I++I +N    + VT +
Sbjct:   42 EYMQFPLVSIKKLNRNSAIYRFKLPTDEHVLGLPIGQHITIKAHI------DGSEVVRSYTPISLDSEAKGYFELLIKSYEQGKISKMFTSLKIGDTIDVQGPKGFYEYTDRSSKHLAMIAGGSGLTPMYQIIKSIAENPKDKTKVTFI 184          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NB5R1_RAT (NADH-cytochrome b5 reductase 1 OS=Rattus norvegicus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 74/172 (43.02%), Postives = 97/172 (56.40%), Query Frame = 1
Query:  244 PKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG---------KMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGGTGITPMLQVIEAILK 675
            P++ L +PD+    +L D   VSHN+  FRF+  P+A   LGL V   +   A +      +   V+RPYTP++  E +G+ DL+IKVY +G         KMSQ+  SLK GDVVE +GP   L Y+        PN K        K +GMIAGGTGITPMLQ+I AILK
Sbjct:   36 PQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFAL-PTAHHILGLPVGKHVYLSARI------DGSQVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFSEGGKMSQYLDSLKIGDVVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILK 200          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NB5R1_MOUSE (NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 75/172 (43.60%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  244 PKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PEG-KMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGGTGITPMLQVIEAILK 675
            P++ L +PD+    +L D   VSHN+  FRF+  P+A   LGL V   +   A +      +   V+RPYTP++  E +G+ DL+IKVY        PEG KMSQ+  SLK GD+VE +GP   L Y+        PN K        K +GMIAGGTGITPMLQ+I AILK
Sbjct:   36 PQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFAL-PTAHHILGLPVGKHVYLSARI------DGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILK 200          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NB5R1_BOVIN (NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CYB5R1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 73/172 (42.44%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  244 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PEG-KMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGGTGITPMLQVIEAILKN 678
            P   L+P++    +L D   V+HN+  FRF+  P+A   LGL V   +   A +      +   V+RPYTP++  E +G+ DL+IKVY        PEG KMSQ+  SLK GDVVE +GP   L Y+        PN K        +++GMIAGGTGITPMLQ+I AILK+
Sbjct:   37 PVTLLDPNEKYQLRLLDKTTVNHNTKRFRFAL-PTAHHVLGLPVGKHVYLSARI------DGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYAGKGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKD 201          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NB5R1_HUMAN (NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=CYB5R1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 74/167 (44.31%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  256 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PEG-KMSQHFASLKPGDVVEVKGPIEKLRYS----------------PNMKKHIGMIAGGTGITPMLQVIEAILK 675
            L+P++    +L D   VSHN+  FRF+  P+A   LGL V   I     L    +G+   V+RPYTP++  E +G+ DL+IKVY        PEG KMSQ+  SLK GDVVE +GP   L Y+                P + K +GMIAGGTGITPMLQ+I AILK
Sbjct:   41 LDPNEKYLLRLLDKTTVSHNTKRFRFAL-PTAHHTLGLPVGKHIY----LSTRIDGSL--VIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILK 200          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NCB5R_CANGA (NADH-cytochrome b5 reductase 1 OS=Candida glabrata GN=CBR1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  280 FKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS-DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNQMTHSGVT 702
            F+L +  +++HN+  ++F   D S  LGL +   I  +  +G       K V R YTP S D E  G F+LL+K YPEG +S+H   +K G+ + + GP     Y PN+ KH+ M+AGGTGITPM Q+++AI ++    + VT
Sbjct:   45 FELVEKEQLTHNTAKYKFKLADESHVLGLPIGQHITVKTIIGG------KPVSRSYTPTSLDEECVGFFELLVKSYPEGNISKHIGDMKIGEKINISGPRGFYEYVPNVHKHLAMVAGGTGITPMFQIMKAIARDPSDKTRVT 181          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NCB5R_ASHGO (NADH-cytochrome b5 reductase 1 OS=Ashbya gossypii GN=CBR1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  247 KIALNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS-DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNQMTHSGVTAV 708
            K  LN D W  F L     ++HN+ ++RF   +  A LGL +   I     +      + K ++R YTP S D++A G+F+LL+K Y +G +S+  A L  GD ++V+GP     Y PNM K IGMIAGGTGI+PM Q+I AI  N    + V  V
Sbjct:   36 KTTLNKD-WQEFSLLTKTVLTHNTAIYRFGLPEADAVLGLPIGQHISISGVI------DGKEMLRSYTPTSLDSDATGYFELLVKSYEKGNISKMLAELAIGDRIKVRGPKGFYHYEPNMYKEIGMIAGGTGISPMYQIIRAIFSNPRDKTRVCLV 184          
BLAST of FC931496 vs. ExPASy Swiss-Prot
Match: NB5R3_BOVIN (NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 74/181 (40.88%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  232 EETGPKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGGTGITPMLQVIEAILKNQMTHS 693
            + + P I L NPD     +L D   +SH++  FRF+   P   LGL V   I   A +    +GN   V+RPYTP+S  + KG  DL+IKVY +         GKMSQ+  S+K GD +E +GP   L Y         P+ K        K +GMIAGGTGITPMLQVI AI+K+   H+
Sbjct:   27 QRSTPAITLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHILGLPVGQHIYLSARI----DGNL--VIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHT 201          
The following BLAST results are available for this feature:
BLAST of FC931496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
NCB5R_SCHPO1.521e-2344.52NADH-cytochrome b5 reductase 1 OS=Schizosaccharomy... [more]
NCB5R_MORAP1.288e-2240.69NADH-cytochrome b5 reductase 1 OS=Mortierella alpi... [more]
NCB5R_VANPO1.682e-2240.27NADH-cytochrome b5 reductase 1 OS=Vanderwaltozyma ... [more]
NB5R1_RAT3.747e-2243.02NADH-cytochrome b5 reductase 1 OS=Rattus norvegicu... [more]
NB5R1_MOUSE3.747e-2243.60NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=... [more]
NB5R1_BOVIN3.747e-2242.44NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CY... [more]
NB5R1_HUMAN6.391e-2244.31NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=... [more]
NCB5R_CANGA1.424e-2139.16NADH-cytochrome b5 reductase 1 OS=Candida glabrata... [more]
NCB5R_ASHGO1.859e-2140.38NADH-cytochrome b5 reductase 1 OS=Ashbya gossypii ... [more]
NB5R3_BOVIN1.859e-2140.88NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CY... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105G03EF PostHarvP1 Citrus clementina cDNA clone C34105G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931496 ID=FC931496; Name=FC931496; organism=Citrus clementina; type=EST; length=710bp
GACTTTTCTTTGCTTTGCTTCTCTCTCCAACATTAGAAAATGGCTACGAC
CTTCTTCAGAAGACTGGCTAAAGCTACTCCAATTGCATTCAACGAGGCAT
TTGGAGGGCAACCCAAGTCCGATTTCAACAAATTTCGATTTCCCTTTGGA
GCAATCGCTGCTGTTGCTGGTGGAGTCTCCTATTACTGTTACTTTTCATC
CCCAAATTTGGTTCATCTAGATCAAATCAATGAAGAGACGGGTCCAAAAA
TTGCTCTCAATCCGGACAAGTGGATTGGATTTAAGTTGCAAGACACTGCA
AGGGTAAGCCACAATAGTCATTTGTTCAGGTTTTCATTTGATCCATCTGC
CAAGTTGGGTTTGGATGTTGCTTCATGCATCCTTACAAGGGCTCCATTAG
GACAAGATGCTGAAGGAAATACAAAATATGTTGTACGGCCGTATACTCCT
ATATCAGATACAGAAGCTAAGGGACACTTTGACTTGTTAATTAAGGTTTA
TCCTGAGGGTAAAATGAGTCAGCATTTTGCTAGCTTAAAACCAGGGGATG
TAGTTGAAGTGAAAGGACCCATTGAAAAGCTCCGATACTCTCCCAATATG
AAGAAACACATCGGCATGATAGCTGGTGGCACAGGTATAACTCCTATGCT
TCAGGTAATTGAGGCTATACTGAAGAATCAGATGACACACTCAGGTGTCA
CTGCTGTATG
back to top