FC931501

Overview
NameFC931501
Unique NameFC931501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  444 ANRERMAQRS---VPAPFLMKTYQLVDDPSTDDVISWN-----ESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            A R++ A  S   VPAPFL KTYQLVDDP+TD V+SW      ES ++F+VW+  +FA+D+LPNYFKH+NFSSFVRQ +TYGFRK+V ++WE
Sbjct:    9 AARQKAAAASASVVPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWE 100          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            PFL KTY +V+DPSTD+ ISWN+SG  F+VW+ A+FA+DLLP +FKH+NFSSFVRQ +TYGF+K+VAD+WE
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWE 80          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            M   + P PFL+KTY +VDDPSTD ++SW+ +  +F+VW   +FAKDLLP YFKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   33 MPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWE 111          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            + P PFLMKTY++VDDP+TD V+SW     +F+VW T +FA+DLLP YFKH+NFSSFVRQ +TYGFRK+  D+WE
Sbjct:   33 TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWE 107          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            + P PFL+KTY +VDDPSTD ++SW+ +  +F+VW   +FAKDLLP YFKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   35 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWE 109          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  447 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            N    A+   P PFL+KTY++V+DP+TD VISWNE G  F+VW+ A+FA+DLLP  FKH NFSSFVRQ +TYGFRK+   +WE
Sbjct:   28 NSTSTAELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWE 110          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            S+P PFL KTY +V+DP+TD ++SW+ +  +FIVW   +F++DLLP YFKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWE 122          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL+KTY++V+D +T+ V+SW   GA+F+VW   DF++DLLP YFKHNNFSSF+RQ +TYGFRKI  ++WE
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWE 90          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            S+P PFL KTY +VDDP TDDV+SW+    +F+VW   +FAK  LP YFKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   20 SIP-PFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWE 93          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.555e-24
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            PAPFL KT Q+V++ +TD+VISW + G +F+VWK  +FA+DLLP +FKH NFSSFVRQ +TYGFRK+V D+WE
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWE 100          
The following BLAST results are available for this feature:
BLAST of FC931501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFB4A_ORYSJ1.080e-2660.87Putative heat stress transcription factor B-4a OS=... [more]
HFB2A_ORYSJ1.410e-2669.01Heat stress transcription factor B-2a OS=Oryza sat... [more]
HSF8_SOLPE6.999e-2662.03Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSFA1_ORYSJ1.559e-2564.00Heat stress transcription factor A-1 OS=Oryza sati... [more]
HSF8_SOLLC1.559e-2564.00Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSFB3_ARATH1.011e-2460.24Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HFA1A_ARATH2.940e-2461.33Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA4D_ORYSJ5.016e-2461.64Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA1E_ARATH5.016e-2464.00Heat stress transcription factor A-1e OS=Arabidops... [more]
HSFB1_ORYSJ8.555e-2464.38Heat stress transcription factor B-1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC34105G08EF PostHarvP1 Citrus clementina cDNA clone C34105G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931501 ID=FC931501; Name=FC931501; organism=Citrus clementina; type=EST; length=696bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
ACTCATACTTATGGATTTCGGAAAATCGTGGCCGACAAATGGGAAT
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