FC931501

Overview
NameFC931501
Unique NameFC931501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.752e-22
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL KTY +VDDP+TD V+SW+ +  +F+VW    F   LLP YFKHNNFSSFVRQ +TYGFRK+  DKWE
Sbjct:   36 PPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWE 108          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            PFL KTY++VDDPSTD V+ W  +G +F+V    +F +DLLP YFKHNNFSSFVRQ +TYGFRK+  ++WE
Sbjct:   12 PFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWE 82          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL KTY LV+DP+TD V+SW+ +G +F+VW    FA  LLP  FKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWE 112          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL KTY++V+DP+TD V+SW+    +F+VW +  F+  LLP YFKH+NFSSF+RQ +TYGFRKI  D+WE
Sbjct:   42 PPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWE 114          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL KT+ LV DP+TD V+SW  +G++F+VW    FA   LP +FKHNNFSSFVRQ +TYGFRKI  D+WE
Sbjct:   35 PPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWE 107          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            PFL KTY++VDD S+D V++W+E+  +FIV   A+F++DLLP +FKH NFSSF+RQ +TYGFRK+  +KWE
Sbjct:   13 PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWE 83          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL KTY++V+D STD VISW+ +  +FIVW +  F+  LLP +FKH+NFSSF+RQ +TYGFRK+  D+WE
Sbjct:   29 PPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWE 101          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  447 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            N       +V APF++KTYQ+V+DPSTD +I+W  +  +FIV    DF++ +LP YFKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:    5 NSNNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWE 87          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            S P PFL KTY LV+D  T+ V+SW++S  +FIVW    F+  LLP +FKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   57 SGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWE 131          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            P PFL KTY +VDD  TD  +SW+ +  +F+VW    FA  LLP +FKHNNFSSFVRQ +TYGFRK+  D+WE
Sbjct:   50 PPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWE 122          
The following BLAST results are available for this feature:
BLAST of FC931501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFA2E_ORYSJ2.752e-2263.01Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA4B_ORYSJ3.594e-2261.97Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA2C_ORYSJ4.694e-2263.01Heat stress transcription factor A-2c OS=Oryza sat... [more]
HSFA2_ARATH8.007e-2258.90Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA2D_ORYSJ1.366e-2161.64Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA4C_ARATH3.974e-2159.15Heat stress transcription factor A-4c OS=Arabidops... [more]
HSF30_SOLPE5.190e-2158.90Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HSFC1_ARATH6.779e-2155.42Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HFA6B_ARATH6.779e-2160.00Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA2B_ORYSJ1.510e-2058.90Heat stress transcription factor A-2b OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105G08EF PostHarvP1 Citrus clementina cDNA clone C34105G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931501 ID=FC931501; Name=FC931501; organism=Citrus clementina; type=EST; length=696bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
ACTCATACTTATGGATTTCGGAAAATCGTGGCCGACAAATGGGAAT
back to top