FC931501

Overview
NameFC931501
Unique NameFC931501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  462 AQRSVPAP-FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVA 683
            A  + P P FL K + LV+DP +DDVI W+ +G  F +     FAK+LLP YFKHNN SSF+RQ + YGFRK+VA
Sbjct:   10 APGAAPVPGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVA 84          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            +VPA FL K + LV DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVV 82          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            +VPA FL K + LV DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVV 82          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            +VPA FL K + LV+DP TD +I W+  G +F V+    FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:   11 NVPA-FLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVV 79          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            FL K + LV+DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:   23 FLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVV 87          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVA 683
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQ + YGFRK+V+
Sbjct:   17 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVS 85          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVA 683
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQ + YGFRK+V+
Sbjct:   18 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVS 86          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVA 683
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQ + YGFRK+V+
Sbjct:   17 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVS 85          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            +VPA FL K + LV DP TD +I W+ SG +F V     FAK++LP YFKH+N +SFVRQ + YGFRK+V
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVV 82          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            M Q S    FL K + LV++  T++ I+W+++G +F+V     FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:    1 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 74          
The following BLAST results are available for this feature:
BLAST of FC931501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF3_CHICK5.938e-1754.67Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF1_MOUSE1.120e-1557.14Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN1.120e-1557.14Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF_XENLA1.463e-1555.71Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF1_CHICK1.463e-1556.92Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF4_MOUSE4.256e-1555.71Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN4.256e-1555.71Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA4.256e-1555.71Heat shock factor protein 4 OS=Canis familiaris GN... [more]
HSF1_BOVIN9.481e-1555.71Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]
HSF2_MOUSE1.617e-1448.65Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105G08EF PostHarvP1 Citrus clementina cDNA clone C34105G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931501 ID=FC931501; Name=FC931501; organism=Citrus clementina; type=EST; length=696bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
ACTCATACTTATGGATTTCGGAAAATCGTGGCCGACAAATGGGAAT
back to top