FC931501

Overview
NameFC931501
Unique NameFC931501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            M Q S    FL K + LV++  T++ I+W+++G +F+V     FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:    1 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 74          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKI 677
            F  K Y +V+D STD +I W++ G +F+V    DFAK +LP YFKHNNFSSFVRQ + YGF K+
Sbjct:   53 FSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKV 116          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIV 680
            A   VPA FL K + LV +  ++ +I+W+++G +F+V     FAK++LP YFKHNN +SFVRQ + YGFRK+V
Sbjct:   17 AGAGVPA-FLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 88          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVA 683
            VPA FL K ++LVDD  T+ +I W + G +F++   A FAK+LLP  +KHNN +SF+RQ + YGF KI +
Sbjct:   46 VPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITS 114          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  450 RERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKI 677
            R   + +S PA F+ K + +++D S   +I W E G +FIV    +F   +LP YFKH+NF+SFVRQ + YG+ K+
Sbjct:  164 RRYQSHKSRPA-FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKV 238          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKI 677
            F+ K ++++++    D+++W E+G +F+V  T  F   +LPN+FKH+NF+SFVRQ + Y F K+
Sbjct:   87 FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKV 150          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKI 677
            F+ K + ++++P    ++ W++SG +FIV  T +F K +LP +FKH+NF+SFVRQ + Y F K+
Sbjct:   10 FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKV 73          
The following BLAST results are available for this feature:
BLAST of FC931501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF2_HUMAN1.617e-1448.65Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF_SCHPO2.758e-1456.25Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF2_CHICK1.369e-1349.32Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
HSF_DROME3.050e-1350.00Heat shock factor protein OS=Drosophila melanogast... [more]
HSF_YEAST2.186e-1142.11Heat shock factor protein OS=Saccharomyces cerevis... [more]
SKN7_YEAST3.728e-1140.63Transcription factor SKN7 OS=Saccharomyces cerevis... [more]
PRR1_SCHPO3.728e-1142.19Transcription factor prr1 OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105G08EF PostHarvP1 Citrus clementina cDNA clone C34105G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931501 ID=FC931501; Name=FC931501; organism=Citrus clementina; type=EST; length=696bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
ACTCATACTTATGGATTTCGGAAAATCGTGGCCGACAAATGGGAAT
back to top