FC931505

Overview
NameFC931505
Unique NameFC931505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 5.473e-33
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            +K+GINGFGRIGR+V R A++ DD+++VAVNDPFI   Y  YM +YDS HG +K   + V+    ++ G+K V  +  R+P  IPW++TGA+Y+VESTGVFT               V+ISAPS DAPM+V+GVN + Y
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGNFK-GTIAVEGSDLVVNGKK-VKFYTERDPSAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNESY 139          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.148e-33
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 2
Query:   86 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 514
            +++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K N    K +  L+     ++VF  + P+EIPW   G+ +VVE+TGV+                VVI APS DAPMFV+GVNEKEY P
Sbjct:   61 RELIVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKGQ--LVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPSPDAPMFVMGVNEKEYNP 200          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.148e-33
Identity = 71/142 (50.00%), Postives = 89/142 (62.68%), Query Frame = 2
Query:   89 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 514
            KIKIGINGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDSVH  W  +    KD    L   + +  F   +P +I W   GA+ V+ESTGVFT               V+I+APS DAPM+V+GVN ++Y P
Sbjct:    4 KIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKD--GFLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMGVNHEKYNP 143          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.219e-32
Identity = 72/139 (51.80%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   98 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 514
            +GINGFGRIGRLV R  LQ+  +++ A+NDPFI   YM YMFKYDS HG++K  E+ ++D K ++ G+  ++VF    P EIPW   GA YVVESTGVF                VV+SAPS DAPMFV+GVN+ +Y P
Sbjct:    6 VGINGFGRIGRLVLRACLQKG-IKVTAINDPFIDLQYMVYMFKYDSTHGRYK-GEVHMEDGKLIVDGQ-AISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSPDAPMFVMGVNQDKYDP 141          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.592e-32
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = 2
Query:   89 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            ++ IGINGFGRIGR+V R ++  +   +VA+NDPFI  +YM YM KYDS HG + + ++  KD K ++ G K +AVF  ++P  IPW + GA YVVESTGVFT               VVISAPS DAPM+V GVN   Y P+
Sbjct:    3 QVNIGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVF-NGDISTKDGKLIVNG-KSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAPSADAPMYVCGVNLDAYDPK 143          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.080e-32
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            +K+GINGFGRIGR+V R A++ DD+ +VAVNDPFI   Y  YM +YD+ HG +K   ++V D   L+   K V  +  R+P  IPW++TGA+Y+VESTGVFT               V+ISAPS DAPM+V+GVN + Y
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFK-GTIEV-DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNETY 139          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.716e-32
Identity = 71/142 (50.00%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            +++ INGFGRIGRLV R+AL R +VE+VA+NDPFIS DY  YMFKYDS HG++   E+   DE +L+   K V VF  R+P  +PW +   +  ++STGVF                VVI+APS  APMFVVGVNE +Y  E
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFA-GEVS-HDENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYNGE 141          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 4.633e-32
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            +++ INGFGRIGRLV R+ALQR +VE+VA+NDPFIS DY  YMFKYDS HG++   E+   D+  ++ G K +A F  R+P  +PWA    +  ++STGVF                VVI+APS  APMFV+GVNE++Y
Sbjct:    2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYA-GEVSHDDKHIIVDGHK-IATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKY 138          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.633e-32
Identity = 69/139 (49.64%), Postives = 88/139 (63.31%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            ++I INGFGRIGRLV RVAL R ++E+VAVNDPFI+TDY  YMFKYDS HG++        D+K ++   K +AV   R+P  +PW     +  ++STGVF                VVI+APS  APMFVVGVNE +Y
Sbjct:    2 VRIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGE--VTHDDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.051e-32
Identity = 72/147 (48.98%), Postives = 92/147 (62.59%), Query Frame = 2
Query:   89 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            K  +GINGFGRIGRLV R A+++D V++VAVNDPFI+ DYM Y+FKYDS HGQ+K          +  KD K+       + VF  ++P  I W    A++VVESTGVFT               V+ISAPS DAPM+VVGVN ++Y
Sbjct:    3 KANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKS----SHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          
The following BLAST results are available for this feature:
BLAST of FC931505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
G3P_SORMA5.473e-3349.64Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3PT_BOVIN7.148e-3349.65Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_CHLRE7.148e-3350.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PT_DANRE1.219e-3251.80Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_USTMA1.592e-3249.65Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_NEUCR2.080e-3249.64Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P2_KLULA2.716e-3250.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P2_YEAST4.633e-3249.64Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P2_CANGA4.633e-3249.64Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P4_CAEEL6.051e-3248.98Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC34105G12EF PostHarvP1 Citrus clementina cDNA clone C34105G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931505 ID=FC931505; Name=FC931505; organism=Citrus clementina; type=EST; length=519bp
GAAAAACAACGCGCCCAACCAAAATTGCAGCGTTAAACAAACCTTCACTA
CTTTCTCATTTTCGATAATATCAATGGCCGGAGACAAGAAGATTAAGATC
GGAATCAACGGTTTCGGAAGGATCGGCCGTTTGGTTGCGAGAGTCGCACT
CCAGAGGGATGATGTGGAGCTGGTGGCTGTCAACGATCCTTTCATCTCCA
CTGATTACATGACATACATGTTTAAGTACGATAGTGTTCACGGTCAGTGG
AAGCACAACGAGTTGAAGGTCAAGGACGAGAAGACCCTCCTCTTCGGTGA
GAAGCCAGTCGCTGTTTTCGGATTCAGGAACCCAGAGGAGATCCCATGGG
CAAAGACTGGAGCCGAGTATGTTGTGGAATCAACTGGAGTGTTCACTGAC
AAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTCGTTAT
CTCCGCCCCTAGCAAGGATGCTCCCATGTTTGTTGTGGGCGTCAACGAGA
AAGAATACAAGCCAGAGCT
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