FC931505

Overview
NameFC931505
Unique NameFC931505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.003e-31
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = 2
Query:   86 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 514
            +++ +GINGFGRIGRLV RV +++  + +VAVNDPFI  +YM YMFKYDS HG++K N      +  L+     +  +  ++P+EIPW+  G  YVVE TGV+                VV++APS DAPMFV+GVNEK+Y P
Sbjct:  106 RELTVGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGNVEHKNGQ--LVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNP 245          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.922e-31
Identity = 73/141 (51.77%), Postives = 90/141 (63.83%), Query Frame = 2
Query:   95 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            KIGINGFGRIGRLV R A+ +    +VAVNDPFI  +YM Y+FK+DS HG++K   +  +    ++ G+K + VF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   Y P+
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFK-GTVAAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPD 140          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.691e-31
Identity = 74/142 (52.11%), Postives = 92/142 (64.79%), Query Frame = 2
Query:   89 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF-TXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 511
            + K+GINGFGRIGRLV R A  ++ V++V+VNDPFI  +YM YM K DS HG +   E+  ++ K  + G K ++V   R+P  IPW K GAEYVVESTGVF T               V+ISAPS DAPMFVVGVNE  Y+
Sbjct:    3 RAKVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFP-GEVSTENGKLKVNG-KLISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPSADAPMFVVGVNENSYE 142          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.691e-31
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            +K+ ING G+IGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++  +     +  TL+   K + VF  R+P ++PW + G +  ++STGVF                VVI+APS  APMFV+GVNE++Y  E
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRANVEVVAINDPFITVDYAAYMFKYDSTHGKYAGD--VQYEGNTLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYAGE 141          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 6.691e-31
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+   D+K ++   K +A +  R+P  +PW  +  +  ++STGVF                VVI+APS  APMFV+GVNE++Y
Sbjct:    2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS-HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKY 138          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.738e-31
Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            ++I INGFGRIGRLV R+AL R ++E+VA+NDPFI+ DY  YMFKYDS HG++   E+   D K+L+   K V VF  R+P  +PW     +  ++STG+F                VVI+APS  APMFVVGVNE +Y
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRF-DGEVS-HDGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.141e-30
Identity = 68/139 (48.92%), Postives = 88/139 (63.31%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            ++I INGFGRIGRLV R+AL R ++E+VA+NDPFI+ DY  YMFKYDS HG++   E+   D K L+   K V VF  R+P  +PW     +  ++STG+F                VVI+APS  APMFVVGVNE +Y
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRF-DGEVS-HDGKALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.490e-30
Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 2
Query:   86 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 514
            +++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+                VVISAPS DAP FV+GVNE  Y P
Sbjct:   75 RELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRDVGSPYVVESTGVYLSIEAASNHISAGAQRVVISAPSPDAPTFVMGVNENNYNP 214          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.320e-30
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            +++ INGFGRIGR+V R+A++RD +++VA+NDPFI+ DY  YMFKYDS HG  +++     D+K L+   K +  +  R+P ++PW     + V+E+TGVFT               VVI+ PS  APMFV GVN+ +Y
Sbjct:    2 VRVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHG--RYDGEVTHDDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFTAKDLAEKHITAGAKKVVITGPSATAPMFVKGVNDDKY 138          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.337e-30
Identity = 67/140 (47.86%), Postives = 85/140 (60.71%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 511
            + + INGFGRIGRLV R + +   + +VA+NDPF+ST YM YM +YD+VHG  K +     DE  +    KP+ VF   NPE I W +   +YVVESTG FT               VVISAPS DAPMFV+GVN + Y+
Sbjct:    1 MNVAINGFGRIGRLVLRASAKNPLINIVAINDPFVSTTYMEYMLEYDTVHG--KFDGSLSHDETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAFTTLEKASTHLKNGVEKVVISAPSSDAPMFVMGVNHELYE 138          
The following BLAST results are available for this feature:
BLAST of FC931505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
G3PT_MOUSE3.003e-3146.85Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_DROME3.922e-3151.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_SCHMA6.691e-3152.11Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_ASHGO6.691e-3146.48Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P3_YEAST6.691e-3146.76Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_KLUMA8.738e-3148.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P3_KLUMA1.141e-3048.92Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3PT_MACFA1.490e-3046.85Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_CANGA3.320e-3043.88Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_PHYIN4.337e-3047.86Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]

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Properties
Property NameValue
Genbank descriptionC34105G12EF PostHarvP1 Citrus clementina cDNA clone C34105G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931505 ID=FC931505; Name=FC931505; organism=Citrus clementina; type=EST; length=519bp
GAAAAACAACGCGCCCAACCAAAATTGCAGCGTTAAACAAACCTTCACTA
CTTTCTCATTTTCGATAATATCAATGGCCGGAGACAAGAAGATTAAGATC
GGAATCAACGGTTTCGGAAGGATCGGCCGTTTGGTTGCGAGAGTCGCACT
CCAGAGGGATGATGTGGAGCTGGTGGCTGTCAACGATCCTTTCATCTCCA
CTGATTACATGACATACATGTTTAAGTACGATAGTGTTCACGGTCAGTGG
AAGCACAACGAGTTGAAGGTCAAGGACGAGAAGACCCTCCTCTTCGGTGA
GAAGCCAGTCGCTGTTTTCGGATTCAGGAACCCAGAGGAGATCCCATGGG
CAAAGACTGGAGCCGAGTATGTTGTGGAATCAACTGGAGTGTTCACTGAC
AAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTCGTTAT
CTCCGCCCCTAGCAAGGATGCTCCCATGTTTGTTGTGGGCGTCAACGAGA
AAGAATACAAGCCAGAGCT
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