FC931505

Overview
NameFC931505
Unique NameFC931505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15341 contig Ccv1_Contig15341:1..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.211e-56
Identity = 106/140 (75.71%), Postives = 116/140 (82.86%), Query Frame = 2
Query:   89 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 508
            KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHG WKH+++ +KD KTLLFG+KPV VFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE +Y
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.697e-56
Identity = 107/143 (74.83%), Postives = 117/143 (81.82%), Query Frame = 2
Query:   89 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            K+KIGINGFGRIGRLVARVAL  DD+ELVAVNDPFI+T+YMTYMFKYDSVHGQWK +ELKVKD KTLLFG+KP+ VFG RNPEE PW + GAEYVVESTGVFT               VVISAPS +APMFVVGVNEKEYK +
Sbjct:    2 KMKIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVGVNEKEYKKD 144          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.889e-50
Identity = 96/148 (64.86%), Postives = 110/148 (74.32%), Query Frame = 2
Query:   74 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            M G  KIK+GINGFGRIGRLVARVAL+RDD+ELVA+NDPFI+ +YMTYMFKYDS HGQWK  E+ +  E  L FG  PVAV+  R+P EIPW K GA++VVESTGVFT               VVISAPSKDAPMFV+GVNE +Y  E
Sbjct:    1 MVGSAKIKVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMGVNENKYSDE 148          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.277e-44
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 2
Query:  179 VNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            VNDPFI+TDYMTYMFKYD+VHGQWKH+E+KVKD KTLLFGEK VAVFG RNPEEIPWA  GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNEKEYK +
Sbjct:    1 VNDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYKSD 113          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.589e-40
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = 2
Query:   95 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            K+GINGFGRIGR+V R AL+  D+++VA+NDPFI  DYM YMFKYDS HG++K  +++ KD K ++ G KP++VFG R+P  IPW K GA+YVVESTGVFT               V+ISAPS DAPMFV GVN + YKPE
Sbjct:    4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFK-GKVETKDGKLVIEG-KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPE 142          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.345e-39
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            I IGINGFGRIGRLV R+ALQR D+++VAVNDPFI+ +Y  YMFKYDS HG++K  E+  KD+  ++ G+  + VFG ++P  IPW K G +YV+ESTGVFT               V+I+APS DAPMFVVGVNE++Y P+
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHGRYK-GEVTSKDDSLVIDGQS-IKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPD 142          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.111e-39
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            +K+GINGFGRIGR+V R A++  D+E+VAVNDPFI  DYM YMFKYDS HG++K   ++VKD K L    K +AVFG ++P  I W + GAEYVVESTGVFT               VVISAPS DAPMFV GVN   YKPE
Sbjct:    3 VKVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFK-GSVEVKDGK-LYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPE 142          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.675e-39
Identity = 82/141 (58.16%), Postives = 99/141 (70.21%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 514
            +K+GINGFGRIGRLV R AL+   VE+VAVNDPFI  DYM YMFK+DSVHG++K   ++ KD K ++ G KP+AVFG R+P  IPW  +GA+YVVESTGVFT               V+ISAPS DAPM+V GVN   Y P
Sbjct:    3 VKVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHGRYK-GTVEAKDGKLIIAG-KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCGVNLDAYDP 141          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.139e-38
Identity = 82/142 (57.75%), Postives = 100/142 (70.42%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            IK+GINGFGRIGR+V R AL+  +VE+VAVNDPFI T+Y  YMFKYDS HG++K  +++ KD   ++ G K + VFG R+P  IPW K GA+YVVESTGVFT               V+ISAPS DAPMFVVGVN   YKP+
Sbjct:    3 IKVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFK-GKVEAKDGGLIIDG-KHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPD 142          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.139e-38
Identity = 81/142 (57.04%), Postives = 99/142 (69.72%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 517
            IKIGINGFGRIGRLV RVAL R D+E+VAVNDPFI+ DY  YMFKYDS HG++K  E+    +  ++ G K + VF  R+P  IPW K+G +YV+ESTGVFT               V+I+APS DAPMFVVGVNE +Y P+
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTASGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPSADAPMFVVGVNEDKYTPD 142          
The following BLAST results are available for this feature:
BLAST of FC931505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
G3PC_MAIZE1.211e-5675.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR2.697e-5674.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA2.889e-5064.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU5.277e-4475.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYCU1.589e-4058.16Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_DEBHA1.345e-3955.63Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CRYNE5.111e-3958.45Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_OMPOL6.675e-3958.16Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_YARLI1.139e-3857.75Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_CANAL1.139e-3857.04Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionC34105G12EF PostHarvP1 Citrus clementina cDNA clone C34105G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931505 ID=FC931505; Name=FC931505; organism=Citrus clementina; type=EST; length=519bp
GAAAAACAACGCGCCCAACCAAAATTGCAGCGTTAAACAAACCTTCACTA
CTTTCTCATTTTCGATAATATCAATGGCCGGAGACAAGAAGATTAAGATC
GGAATCAACGGTTTCGGAAGGATCGGCCGTTTGGTTGCGAGAGTCGCACT
CCAGAGGGATGATGTGGAGCTGGTGGCTGTCAACGATCCTTTCATCTCCA
CTGATTACATGACATACATGTTTAAGTACGATAGTGTTCACGGTCAGTGG
AAGCACAACGAGTTGAAGGTCAAGGACGAGAAGACCCTCCTCTTCGGTGA
GAAGCCAGTCGCTGTTTTCGGATTCAGGAACCCAGAGGAGATCCCATGGG
CAAAGACTGGAGCCGAGTATGTTGTGGAATCAACTGGAGTGTTCACTGAC
AAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTCGTTAT
CTCCGCCCCTAGCAAGGATGCTCCCATGTTTGTTGTGGGCGTCAACGAGA
AAGAATACAAGCCAGAGCT
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