FC931505

Overview
NameFC931505
Unique NameFC931505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SHIFL (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri GN=epd PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SHIF8 (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SHIDS (D-erythrose-4-phosphate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SHIBS (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SHIB3 (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SALEP (D-erythrose-4-phosphate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            ++I INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ E+  LF G+  + +   R   ++PW + G + V++ TGV+                V+ S P S D    VV GVN+ E + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNELRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_SALDC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            ++I INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ E+  LF G+  + +   R   ++PW + G + V++ TGV+                V+ S P S D    VV GVN+ E + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNELRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_ECOUT (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=epd PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSM (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC931505 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSE (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SE11) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   92 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPE 517
            +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++     + +D+  L  G+  + V   R+ + +PW + G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
The following BLAST results are available for this feature:
BLAST of FC931505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
E4PD_SHIFL4.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIF84.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIDS4.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIBS4.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIB34.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SALEP4.509e-1131.76D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALDC4.509e-1131.76D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_ECOUT4.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSM4.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSE4.509e-1129.93D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105G12EF PostHarvP1 Citrus clementina cDNA clone C34105G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931505 ID=FC931505; Name=FC931505; organism=Citrus clementina; type=EST; length=519bp
GAAAAACAACGCGCCCAACCAAAATTGCAGCGTTAAACAAACCTTCACTA
CTTTCTCATTTTCGATAATATCAATGGCCGGAGACAAGAAGATTAAGATC
GGAATCAACGGTTTCGGAAGGATCGGCCGTTTGGTTGCGAGAGTCGCACT
CCAGAGGGATGATGTGGAGCTGGTGGCTGTCAACGATCCTTTCATCTCCA
CTGATTACATGACATACATGTTTAAGTACGATAGTGTTCACGGTCAGTGG
AAGCACAACGAGTTGAAGGTCAAGGACGAGAAGACCCTCCTCTTCGGTGA
GAAGCCAGTCGCTGTTTTCGGATTCAGGAACCCAGAGGAGATCCCATGGG
CAAAGACTGGAGCCGAGTATGTTGTGGAATCAACTGGAGTGTTCACTGAC
AAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTCGTTAT
CTCCGCCCCTAGCAAGGATGCTCCCATGTTTGTTGTGGGCGTCAACGAGA
AAGAATACAAGCCAGAGCT
back to top