FC931507

Overview
NameFC931507
Unique NameFC931507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12207 contig Ccv1_Contig12207:56..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.183e-22
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 2
Query:  422 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIP 679
            S + S DVLAL+S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V ++ L DP+ D VRVK  +  WLV +G+CTHLGC+P
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVP 127          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.442e-22
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  299 HNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRD-----------PQEDSVRVKNP--EWLVVVGVCTHLGCIP 679
            H  E      A++R F Y+   G   V A      ++     M+ S DV ALAS++VD+S +E GT +TVKW GKPVFIRRRTE++IQ    VD+  L D           P  D  R  +   EWLV++GVCTHLGC+P
Sbjct:    3 HADEHAGDHGATRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVP 139          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  422 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIP 679
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTHLGC+P
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVP 127          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  422 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIP 679
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTHLGC+P
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVP 127          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  425 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVR------------------VKNPEWLVVVGVCTHLGCIP 679
            M+AS DV A+AS+ VD+S++E GT +TVKWRGKPVFIRRR E+DI+LA SV + +LRD   ++                        EWLV++GVCTHLGC+P
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVP 140          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  413 FVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIP 679
            F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V+VASL DPQ D  RVK  + +WLVV+G+CTHLGCIP
Sbjct:   35 FISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIP 126          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19
Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  332 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRV--------------KNPEWLVVVGVCTHLGCIP 679
            ++R F Y+   G   V        +   +  M+ S DV ALAS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV +  L D    +  +              +  EWLV+ GVCTHLGC+P
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVP 136          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  326 DASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIP 679
            +A++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++IQ   + DV +L DPQ DS RVK    EWLVV   CTHLGCIP
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIP 125          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  404 ILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVD---------VASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            ++ FV SM+ S    A  A +E D+S +EPG  + VKWRG PV++  R+ E +   +S D         V    D  ++  R   PE+LV +G+CTHLGC P
Sbjct:   40 LVPFVASMNPSARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSNDPKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSP 141          
The following BLAST results are available for this feature:
BLAST of FC931507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RICPR1.183e-2256.82Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE3.442e-2242.86Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE7.668e-2256.82Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN7.668e-2256.82Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA6.491e-2149.51Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA4.652e-1951.09Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH6.076e-1940.77Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI3.015e-1842.15Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI2.734e-1138.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionC34105H02EF PostHarvP1 Citrus clementina cDNA clone C34105H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931507 ID=FC931507; Name=FC931507; organism=Citrus clementina; type=EST; length=681bp
GAGAGTGTCGGGGAGGAGACTCTCATCCTTACGCTGGAACTTGCAGCAGA
CAACCTCCGCCTTCCTATCTGGGAACTATCTTAATGACGGCGGCTGCGAC
GCTGCCGCTGCCGCTCAATCTCTCTCCAGATCCGTCAATTCCCCGCTTCC
TTTCTCTTTCACTTCCCACATTCCGCATCTCATCAGAGGTTTGTCTGCTG
AAGCCCTCAGTCTAGGACGTGATTTGGGTCTGATCTCAGACCTTCCAGCT
ACTGTGGCAGCTGTGAAGAACCCAACTTCAAAAATTGTCTATGATGAGCA
CAATCATGAGCGTTATCCACCTGGTGACGCCAGCAAGCGTGCATTTGCTT
ATTTTATCTTGACAGGTGGCAGGTTTGTGTATGCCTCCTTAATTCGTCTT
TTGATCCTCAAGTTTGTTCTTAGCATGTCTGCGAGCAAAGATGTCCTTGC
CCTTGCCTCCCTTGAGGTTGACCTATCCAGCATTGAACCCGGGACTACTG
TTACAGTCAAGTGGCGTGGGAAGCCAGTTTTCATCAGGCGTCGGACTGAA
GAGGATATTCAGTTGGCTAACAGTGTTGATGTAGCGTCACTCCGGGACCC
ACAGGAAGATTCTGTCAGGGTTAAGAATCCAGAATGGCTTGTCGTTGTTG
GTGTGTGCACACATTTGGGGTGCATTCCTTT
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