FC931509

Overview
NameFC931509
Unique NameFC931509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931509_ssr21 microsatellite FC931509_ssr21:21..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:5..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROVI (Heat shock protein 83 (Fragment) OS=Drosophila virilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROSI (Heat shock protein 83 (Fragment) OS=Drosophila simulans GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROPE (Heat shock protein 83 (Fragment) OS=Drosophila persimilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROMI (Heat shock protein 83 (Fragment) OS=Drosophila miranda GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2 
Query:  113 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL+I +IP+KT  +L+IID+GIGMTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 6.123e-45
Identity = 93/124 (75.00%), Postives = 108/124 (87.10%), Query Frame = 2 
Query:   92 VERQVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            V+ Q   M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  +L I++IP+K + +L+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    5 VQTQDQPMEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKDLKINLIPNKHDRTLTIVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 128
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90A_CRIGR (Heat shock protein HSP 90-alpha OS=Cricetulus griseus GN=HSP90AA1 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 7.997e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 2 
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I+IIP+K + +L+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINIIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
[Close]
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.364e-44
Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 2 
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+ESLTD SKLD+  EL I++IP+K + +L+I+D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   16 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 129
The following BLAST results are available for this feature:
BLAST of FC931509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP83_DROVI3.590e-4578.63Heat shock protein 83 (Fragment) OS=Drosophila vir... [more]
HSP83_DROSI3.590e-4578.63Heat shock protein 83 (Fragment) OS=Drosophila sim... [more]
HSP83_DROPS3.590e-4578.63Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP83_DROPE3.590e-4578.63Heat shock protein 83 (Fragment) OS=Drosophila per... [more]
HSP83_DROMI3.590e-4578.63Heat shock protein 83 (Fragment) OS=Drosophila mir... [more]
HSP83_DROME3.590e-4578.63Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP83_DROAV3.590e-4578.63Heat shock protein 83 OS=Drosophila auraria GN=Hsp... [more]
HS90A_CHICK6.123e-4575.00Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]
HS90A_CRIGR7.997e-4579.82Heat shock protein HSP 90-alpha OS=Cricetulus gris... [more]
HS90A_RAT1.364e-4478.95Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC34105H04EF PostHarvP1 Citrus clementina cDNA clone C34105H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931509 ID=FC931509; Name=FC931509; organism=Citrus clementina; type=EST; length=463bp
GACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTT
CCAAAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGG
CAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGA
GATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGG
AGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAG
ATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGA
GCTTTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTA
TTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGT
ACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGG
GGCGGATGTGAGC
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