FC931509

Overview
NameFC931509
Unique NameFC931509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931509_ssr21 microsatellite FC931509_ssr21:21..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:5..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP90_EIMTE (Heat shock protein 90 OS=Eimeria tenella GN=HSP90 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.508e-43
Identity = 87/112 (77.68%), Postives = 100/112 (89.29%), Query Frame = 2
Query:  128 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            ETFAF A+I QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+E++T+  KL  +PELFI +IPDK NN+L+I +SGIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    5 ETFAFNADIQQLMSLIINTFYSNKEIFLRELISNASDALDKIRYEAITEPEKLKTKPELFIRLIPDKANNTLTIENSGIGMTKADLVNNLGTIARSGTKAFMEALQAGGDIS 116          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.360e-43
Identity = 88/113 (77.88%), Postives = 100/113 (88.50%), Query Frame = 2
Query:  125 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISNSSDA DKIR++SLT++S L  +P L I +IPD+ N +L++ DSGIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVLGDEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALEAGGDMS 114          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 4.388e-43
Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP90_PODAN (Heat shock protein 90 homolog OS=Podospora anserina GN=MOD-E PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.731e-43
Identity = 89/112 (79.46%), Postives = 100/112 (89.29%), Query Frame = 2
Query:  128 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            ETF FQAEI+QLLSLIINT YSNKEIFLREL+SN+SDALDKIR+ESL+D SKLD   +L I IIPDK N +L+I D+GIGMTKADLVNNLGTIARSGTK+FMEAL AGAD+S
Sbjct:    3 ETFEFQAEISQLLSLIINTVYSNKEIFLRELVSNASDALDKIRYESLSDPSKLDTGKDLRIDIIPDKENKTLTIQDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADIS 114          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 5.731e-43
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.731e-43
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.731e-43
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 5.731e-43
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 5.731e-43
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  122 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    +L+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 7.485e-43
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  125 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISN+SDA DKIR++SLTD S L   P L I ++PDK N +L++ D+GIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMS 114          
The following BLAST results are available for this feature:
BLAST of FC931509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP90_EIMTE1.508e-4377.68Heat shock protein 90 OS=Eimeria tenella GN=HSP90 ... [more]
HSP83_TRYBB3.360e-4377.88Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HS90B_BOVIN4.388e-4378.07Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HSP90_PODAN5.731e-4379.46Heat shock protein 90 homolog OS=Podospora anserin... [more]
HS90B_RAT5.731e-4377.19Heat shock protein HSP 90-beta OS=Rattus norvegicu... [more]
HS90B_PONAB5.731e-4377.19Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MACFA5.731e-4377.19Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN5.731e-4377.19Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE5.731e-4377.19Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HSP83_LEIIN7.485e-4376.99Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34105H04EF PostHarvP1 Citrus clementina cDNA clone C34105H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931509 ID=FC931509; Name=FC931509; organism=Citrus clementina; type=EST; length=463bp
GACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTT
CCAAAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGG
CAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGA
GATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGG
AGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAG
ATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGA
GCTTTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTA
TTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGT
ACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGG
GGCGGATGTGAGC
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