FC931509

Overview
NameFC931509
Unique NameFC931509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931509_ssr21 microsatellite FC931509_ssr21:21..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:5..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HTPG_HELHP (Chaperone protein htpG OS=Helicobacter hepaticus GN=htpG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.904e-20
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  140 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 445
            FQ EI QLL L+I++ YS+KEIFLRELISN+SDALDK+ + +LT ++      E  I I  D+   +++I D+GIGM + D+  +LG IA+SGTK F+  L+
Sbjct:    7 FQTEITQLLDLMIHSLYSHKEIFLRELISNASDALDKLSYLTLTQENLKTLSFEPRIDISFDEEKKTITIEDNGIGMNENDMKEHLGIIAKSGTKSFLSQLS 108          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.519e-19
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  125 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL-DAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 457
            +E  +FQ E  ++L ++  + Y+ KE+F+RELISN+SDA++K+R   LT+ S + DA     I I  D+ N +L I DSGIGMTK +++ NLG I  SG+ +F++ L    D
Sbjct:   98 SEKLSFQTETQKILHIVAESLYTEKEVFIRELISNASDAIEKVRHTQLTNASMIEDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPD 209          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.519e-19
Identity = 46/107 (42.99%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  128 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 448
            E+  F+A++ +LL +++++ YS+K++FLRELISN++DA +++R+E+++D + L  +    I I  D     L++ D+GIGM + +LV+ LGTIARSGTK F+E   A
Sbjct:   12 ESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEA 118          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 46/106 (43.40%), Postives = 75/106 (70.75%), Query Frame = 2
Query:  128 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 445
            E+  F+A++ +LL +++++ YS+K +FLRELISN +DA +K+R+E++   S L A  E  I +  D+ +  L + D+GIGM + +++  LGTIARSGT+ FME +A
Sbjct:   10 ESHVFEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAADAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERIA 115          
BLAST of FC931509 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 2
Query:  260 ESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 463
            ESLTD SKLD+  E  I +IP+K + +L+I+D+GIGMTKADL+NNLGTI +S TK FME L AGAD+S
Sbjct:    2 ESLTDPSKLDSGKEPHISLIPNKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADIS 69          
The following BLAST results are available for this feature:
BLAST of FC931509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_HELHP8.904e-2050.00Chaperone protein htpG OS=Helicobacter hepaticus G... [more]
TRAP1_DICDI1.519e-1942.86TNF receptor-associated protein 1 homolog, mitocho... [more]
HTPG_NITWN1.519e-1942.99Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]
HTPG_RHIEC1.984e-1943.40Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HS904_HUMAN8.334e-1864.71Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC34105H04EF PostHarvP1 Citrus clementina cDNA clone C34105H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931509 ID=FC931509; Name=FC931509; organism=Citrus clementina; type=EST; length=463bp
GACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTT
CCAAAAACCCTTGTTTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGG
CAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGA
GATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGG
AGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAG
ATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGA
GCTTTTCATTCACATTATCCCTGATAAGACCAACAACTCATTGTCTATTA
TTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGT
ACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGG
GGCGGATGTGAGC
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