FC931510

Overview
NameFC931510
Unique NameFC931510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 591
            K+ ++GD G GK++ V R +   F+    PT G               +F  WDTAGQE+F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 48/165 (29.09%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            +K+V+VG GG GK+    + +   F  +Y+PT            +   I     DTAGQE++  +R+ Y   G+  ++++ VT+R ++  + ++++ + RV ++  IP+V+ GNK+D++N RQV  +  +   ++ N  + E SAK   N ++ F  L R +  D
Sbjct:   11 YKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVVIDDKVSI-LDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIRLVRDD 174          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 47/161 (29.19%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 591
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   +++    +   + RV   E+IP +L GNK D+ + R+V   +     ++  + Y E SAK+  N +K F  L R++
Sbjct:   13 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREI 172          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 52/165 (31.52%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 591
            K+ ++GD G GK++ V R +   F+    PT G       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    + +       E SAK+  N E+ F  ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 53/185 (28.65%), Postives = 89/185 (48.11%), Query Frame = 1
Query:   73 QLMALPSQQTVDYPSF--KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDV-KNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL---AGD 600
            Q   LP   T     +  KLV++G    GKT+   R++  +F     PT G              ++   WDTAGQEK+  +   Y+     A++++D+T + ++     W  DL +  +   + ++L GNK D+ + R+V  ++   F   K+L + E SAK NY   + F  +A++L   AGD
Sbjct:    3 QAAGLPQASTASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVL-PTVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQELLQRAGD 186          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT   + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRSVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  115 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQ------YYEISAKSNYNFEKPFLYLARKL 591
            ++K+V+ GD   GK++F+ R    EF+     T GV+        +  +     WDTAGQE+F  +   Y+      ++++DVT   ++ NV  W  D+        IPI+L GNK D++  +     K ++ +  + L       + E SAK   N  +  L+LAR++
Sbjct:  428 AYKIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLIVDGEQTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNVREW-VDMVEDGTHRTIPIMLVGNKADLRDVDNAENQKCISAYLGEKLAMTYGALFCETSAKDGSNVVEAVLHLAREV 595          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 49/165 (29.70%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            +KLVIVG GG GK+    + +   F  +Y+PT   + +      +         DTAGQE++  +RD Y   GQ  + ++ +T+R ++  + ++   + RV   + +P+++ GNK D++  RQV   +     R     + E SAKS  N E+ F  L R++  D
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIRKD 167          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 45/167 (26.95%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 591
            +K+++VG+ G GK++ + R     F + + PT GV+  V  +        ++   WDTAGQE+F  +   +Y      I+++DVT   +++    W  D+ +  ++ + I+L GNK D+    V  ++VTF + + +      ++ E+SAK N    + F  L + +
Sbjct:    7 YKIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDM----VAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQDI 169          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 54/167 (32.34%), Postives = 77/167 (46.11%), Query Frame = 1
Query:  100 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 582
            TV     K+V+VGD   GKT+ + R     F++ Y+ T GV+     F           WDTAGQEKF  +   YY   Q  I  FD+T   T ++   W  D  R  E  +  I L G K D+ +     Q +A  V   R+   +Y+ +SAK+  N +  F  +A
Sbjct:  118 TVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVA 284          
The following BLAST results are available for this feature:
BLAST of FC931510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB22A_MOUSE3.500e-1329.38Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RAS1_YEAST3.500e-1329.09Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RALA_DROME3.500e-1329.19Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RAB31_HUMAN3.500e-1331.52Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB17_MOUSE3.500e-1328.65Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]
RAS_CARAU4.572e-1329.19Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RASEF_MOUSE4.572e-1328.40RAS and EF-hand domain-containing protein homolog ... [more]
RAS1_PHYPO4.572e-1329.70Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RABC_DICDI4.572e-1326.95Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB36_HUMAN4.572e-1332.34Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionC34105H05EF PostHarvP1 Citrus clementina cDNA clone C34105H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931510 ID=FC931510; Name=FC931510; organism=Citrus clementina; type=EST; length=752bp
GGTCTCTCTCTCTCTCTCTCGCTCACTTCTGTGTTCAGACCGCGAACTTC
GTATTCTTTCGCACACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAA
CTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACT
GGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAA
GTATGAACCAACTACTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAA
ATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAG
TTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGTGCCATCAT
TATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCCCACTTGGC
ACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGG
AACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTT
CCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCAACT
ACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGAC
CCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACA
GATTGACTTAGCTGCACAGCAACACATGAAGCCGAGCTTTGCGCAGCAGC
TAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGAGTAGAGAGAAC
TG
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