FC931510

Overview
NameFC931510
Unique NameFC931510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT   + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT   + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RASK_HUMAN (GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT   + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT                +  Y  DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDYL-DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 45/162 (27.78%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +K+V++G GG GK+    + +TG F +KY+PT   + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    + E SAKS    ++ F  + R++
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 45/162 (27.78%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +K+V++G GG GK+    + +TG F +KY+PT   + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    + E SAKS    ++ F  + R++
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 45/162 (27.78%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +K+V++G GG GK+    + +TG F +KY+PT   + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    + E SAKS    ++ F  + R++
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13
Identity = 47/160 (29.38%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 591
            K+ ++GD G GK++ V R +   F+    PT G               +F  WDTAGQE F  L   YY     AII++D+T   T+  +  W ++L +    NI + + GNK D +  R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13
Identity = 50/172 (29.07%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTT----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT             EV  LD             DTAGQE++G +R+ Y   G+  ++++ +T+R +++ + T+H+ + RV   +  P+V+  NK D++  RQV   +     R    ++ E SAK   N ++ F  L R++
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVL-----------DTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREI 171          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13
Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTT----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PT             EV  LD             DTAGQE++  +R+ Y   G+  ++++ +T+R +++ + T+ + + RV +    P+V+ GNK D++  +   +Q      +    ++ E SAKS  N +K F  + R++
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCVIDEEVALLDVL-----------DTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREI 169          
The following BLAST results are available for this feature:
BLAST of FC931510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_RAT5.971e-1329.19GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]
RASK_MOUSE5.971e-1329.19GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RASK_HUMAN5.971e-1329.19GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1[more]
RASH_MOUSE5.971e-1329.19GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAP2A_PONAB5.971e-1327.78Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE5.971e-1327.78Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN5.971e-1327.78Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RB22A_CANFA7.798e-1329.38Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RAS_LENED7.798e-1329.07Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RASL_COLTR7.798e-1327.33Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105H05EF PostHarvP1 Citrus clementina cDNA clone C34105H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931510 ID=FC931510; Name=FC931510; organism=Citrus clementina; type=EST; length=752bp
GGTCTCTCTCTCTCTCTCTCGCTCACTTCTGTGTTCAGACCGCGAACTTC
GTATTCTTTCGCACACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAA
CTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACT
GGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAA
GTATGAACCAACTACTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAA
ATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAG
TTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGTGCCATCAT
TATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCCCACTTGGC
ACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGG
AACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTT
CCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCAACT
ACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGAC
CCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACA
GATTGACTTAGCTGCACAGCAACACATGAAGCCGAGCTTTGCGCAGCAGC
TAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGAGTAGAGAGAAC
TG
back to top