FC931510

Overview
NameFC931510
Unique NameFC931510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931510_ssr3 microsatellite FC931510_ssr3:3..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14105 contig Ccv1_Contig14105:25..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 55/178 (30.90%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNLHFVES 624
            FK++++GDGG GK++ + R++T +F+ +   T GVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK D+K RQV  ++     K N    Y+E SAK + N    F    R++    D + H +++
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSDHLIQT 185          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 51/163 (31.29%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 585
            K++I+GD G GKT+ + +++  +F  +Y+ T G +    +   +   +    WDTAGQE+F  L   +Y    C ++ +DV    T++N+ +W  +       R  +N P V+ GNK+D++N++V   K        K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIAR 172          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF-----------VESPALAPPE 645
            FK++++GD   GKT  V R  +G F    + T GV+    +   N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++     +K+  L   E SAK ++N ++ FL +A++L      H+              P LAPPE
Sbjct:   16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHSESPRNSFMLDSKPVLAPPE 206          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 59/164 (35.98%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 597
            FKLV +GD   GKT+ + R +  +F+  Y+PT G++      +     +R   WDTAGQE+F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+ RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct:   10 FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 55/165 (33.33%), Postives = 93/165 (56.36%), Query Frame = 1
Query:   85 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 570
            +P ++  +Y  FK+VI+GD   GK+  + R    EF +K + T GV+        +   I   CWDTAGQE+F  +  GYY     A+I++D+T+++++KNV  W  +L  + E +I I++ GNK D++ +R+V  K+   F     + + E SA ++ N  + F
Sbjct:    1 MPQEEEAEY-LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSF 164          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            FK+V++G+ G GKT  V+R   G F      T GV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  +
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 173          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            FK+V++G+ G GKT  V+R   G F      T GV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  +
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 173          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            FK+V++G+ G GKT  V+R   G F      T GV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  +
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 173          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 61/191 (31.94%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF-----------VESPALAPPE 645
            FK++++GD   GKT  V R  +G F    + T GV+        N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++     +K+  L   E SAK ++N ++ FL +A++L      H+              P LAPPE
Sbjct:   16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHNESPRNSFILDSKPVLAPPE 206          
BLAST of FC931510 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 58/160 (36.25%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTTGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 591
            K+V++G    GKT    R++ G F K+   T G             KI++  WD+AGQ++F  L   YY     AI++FD+T + T+  V  W  +L   + E I +VLCGNK+D+ +NRQVK++    +  + N  Y E SAK N   E  FL + +KL
Sbjct:   11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKL 170          
The following BLAST results are available for this feature:
BLAST of FC931510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB9A_RAT4.561e-2130.90Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB7A_DICDI1.016e-2031.29Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]
RAB19_XENTR1.016e-2031.94Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RBH1C_ARATH1.327e-2035.98Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RB11C_DICDI1.327e-2033.33Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB30_MOUSE1.327e-2034.15Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.327e-2034.15Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.327e-2034.15Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB19_XENLA1.327e-2031.94Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RABJ_DICDI5.043e-2036.25Ras-related protein RabJ OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105H05EF PostHarvP1 Citrus clementina cDNA clone C34105H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931510 ID=FC931510; Name=FC931510; organism=Citrus clementina; type=EST; length=752bp
GGTCTCTCTCTCTCTCTCTCGCTCACTTCTGTGTTCAGACCGCGAACTTC
GTATTCTTTCGCACACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAA
CTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACT
GGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAA
GTATGAACCAACTACTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAA
ATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAG
TTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGTGCCATCAT
TATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCCCACTTGGC
ACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGG
AACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTT
CCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCAACT
ACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGAC
CCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACA
GATTGACTTAGCTGCACAGCAACACATGAAGCCGAGCTTTGCGCAGCAGC
TAGCCAGCCGCTTCCTGATGACGATGATGATGCATTTGAGTAGAGAGAAC
TG
back to top