FC931519

Overview
NameFC931519
Unique NameFC931519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15344 contig Ccv1_Contig15344:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CYAP7 (Elongation factor P OS=Cyanothece sp. (strain PCC 7424) GN=efp PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLF 694
            SSND + G +IE++G+ W+V+EFLHVKPGKG+AFVRT L+N  +G  +ERTFRAG TV +A + K T Q TYK+G  FVFMD+ T+EE RLN   +GD  K++KE   +++L+
Sbjct:    3 SSNDFRPGVSIELEGSIWKVVEFLHVKPGKGSAFVRTTLKNVQTGKVLERTFRAGETVPQATIEKRTMQHTYKEGEQFVFMDMETYEEARLNPEQLGDGAKYIKENMEVNVLY 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_PROM1 (Elongation factor P OS=Prochlorococcus marinus (strain NATL1A) GN=efp PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+  +SG+ VE+TFRAG  V +A + K   Q TY DG  FVFMD+T++EE RL    +G+ +K+LKEG
Sbjct:    3 SSNDFRTGTTIELDGAVWRVIEFLHVKPGKGSAFVRTKLKAVVSGSVVEKTFRAGEMVPQALLEKSKLQHTYMDGDEFVFMDMTSYEETRLTAKQIGESRKYLKEG 108          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_TRIEI (Elongation factor P OS=Trichodesmium erythraeum (strain IMS101) GN=efp PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 62/112 (55.36%), Postives = 82/112 (73.21%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            SSND + G  IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G  VERTFRAG TV +A + K   Q TYKD   FVFMD+ T+EE  L+   +G++ K+L EG  ++++
Sbjct:    3 SSNDFRPGVTIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNVQNGNVVERTFRAGETVPQATLDKRAMQHTYKDSDQFVFMDMETYEETNLSSEQIGERVKYLNEGMEVNVI 114          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_PROMT (Elongation factor P OS=Prochlorococcus marinus (strain NATL2A) GN=efp PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+  +SG  VE+TFRAG  V +A + K   Q TY DG  FVFMD+T++EE RL    +G+ +K+LKEG
Sbjct:    3 SSNDFRTGTTIELDGAVWRVIEFLHVKPGKGSAFVRTKLKAVVSGNVVEKTFRAGEMVPQALLEKSKLQHTYMDGDDFVFMDMTSYEETRLTAKQIGESRKYLKEG 108          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNY3 (Elongation factor P OS=Synechocystis sp. (strain PCC 6803) GN=efp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKE 670
            SSND + G++I +DGA W+V+EFLHVKPGKG+AFVRTKL++  +G  VE+TFRAG TV +A++ K   Q TYKDG  +VFMD+ TFEEV +    +GDK K++KE
Sbjct:    3 SSNDFRTGTSIVMDGAVWKVVEFLHVKPGKGSAFVRTKLKSVQTGNVVEKTFRAGETVPQANIEKSVMQHTYKDGDQYVFMDMETFEEVSIAPDTLGDKAKFIKE 107          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNS9 (Elongation factor P OS=Synechococcus sp. (strain CC9902) GN=efp PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G++IE+DGA WRV+EFLHVKPGKG+AFVRTKL++  +G+ VE+TFRAG  + +A + K + Q TY +G  +VFMD++++EE RL    +GD +K+LKEG
Sbjct:    3 SSNDFRTGTSIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKSVKNGSVVEKTFRAGEMLPQALLEKSSLQHTYMEGDDYVFMDMSSYEETRLTAAQIGDSRKYLKEG 108          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_PROM0 (Elongation factor P OS=Prochlorococcus marinus (strain MIT 9301) GN=efp PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 61/116 (52.59%), Postives = 85/116 (73.28%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            SSND + G+ IE+DG  WRV+EFLHVKPGKG+AFVRTKL++  +G  VE+TFRAG +V++A + K   Q TY +   +VFMD+T+FEE RL+   +G   K+LKEG  ++++F  G
Sbjct:    3 SSNDFRTGTTIELDGQVWRVVEFLHVKPGKGSAFVRTKLKSVQNGNVVEKTFRAGESVQQAILEKSNLQHTYVESGDYVFMDMTSFEETRLSSEQIGKGAKYLKEGMEVNVIFHNG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_ANAVT (Elongation factor P OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=efp PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            SSND + G +I +DG+ WRV++FLHVKPGKG+AFVRT L+N  SG  +E+TFRAG TV +A + K T Q TYK+G  FVFMD+ ++EE RL+ + +GD+ K+LKEG  ++++
Sbjct:    3 SSNDFRPGVSIVLDGSVWRVIDFLHVKPGKGSAFVRTTLKNVQSGKVLEKTFRAGETVPQATLEKITMQHTYKEGDEFVFMDMESYEEGRLSASQIGDRVKYLKEGMEVNVI 114          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNSC (Elongation factor P OS=Synechococcus sp. (strain CC9605) GN=efp PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+   SG  VE+TFRAG  + +A + K + Q TY +G  +VFMD+ T+EE RL+   +G+ +K+LKEG
Sbjct:    3 SSNDFRTGTTIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKAVKSGNVVEKTFRAGEMLPQAMLEKSSLQHTYMEGEDYVFMDMATYEETRLSADQIGESRKYLKEG 108          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNPW (Elongation factor P OS=Synechococcus sp. (strain WH7803) GN=efp PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 61/106 (57.55%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+   SG  VE+TFRAG  + +A + K T Q TY +G  +VFMD+ T+EE RL+   +G+ +K+LKEG
Sbjct:    3 SSNDFRTGTTIELDGAVWRVVEFLHVKPGKGSAFVRTKLKAVQSGNVVEKTFRAGEMLPQAILEKATLQHTYMEGEDYVFMDMGTYEETRLSAKQIGESRKYLKEG 108          
The following BLAST results are available for this feature:
BLAST of FC931519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 495
Match NameE-valueIdentityDescription
EFP_CYAP79.677e-3154.87Elongation factor P OS=Cyanothece sp. (strain PCC ... [more]
EFP_PROM11.264e-3059.43Elongation factor P OS=Prochlorococcus marinus (st... [more]
EFP_TRIEI1.651e-3055.36Elongation factor P OS=Trichodesmium erythraeum (s... [more]
EFP_PROMT2.156e-3059.43Elongation factor P OS=Prochlorococcus marinus (st... [more]
EFP_SYNY32.816e-3058.10Elongation factor P OS=Synechocystis sp. (strain P... [more]
EFP_SYNS91.070e-2955.66Elongation factor P OS=Synechococcus sp. (strain C... [more]
EFP_PROM01.397e-2952.59Elongation factor P OS=Prochlorococcus marinus (st... [more]
EFP_ANAVT1.397e-2954.46Elongation factor P OS=Anabaena variabilis (strain... [more]
EFP_SYNSC1.825e-2956.60Elongation factor P OS=Synechococcus sp. (strain C... [more]
EFP_SYNPW1.825e-2957.55Elongation factor P OS=Synechococcus sp. (strain W... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106A03EF PostHarvP1 Citrus clementina cDNA clone C34106A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931519 ID=FC931519; Name=FC931519; organism=Citrus clementina; type=EST; length=704bp
GGCGTTCATTCTACTACTGTTTTATTCTCATTTTTTTCAAAAAAAAAATA
ATAATAGGGGAAGAAGGTATTGGCTGCTCTCAAGTCTCGATATGCTTTAG
GCGGTAGTACCCAGACTCTCATTCCGGGACACACTCCTTATCTAAGAGAG
CGTGTCGCGGCCTTCTGTATTTTGTTTGATAAAACCAAATATCATTTCTC
ACAGATAACCAACCACCATGGCGGGAACCGCCGCCACCGTTAATCTCTCA
TCAGCGCCCTATCTCCTCCGCCGTTCGTCATTTACTACACTCTCGTCAAA
GCCGTCCGTACTCCCAATGCGACCACGTTCCAAATTTCCCAGGATCTACG
CGTTTAGTAGCAACGATATCAAAGTGGGTTCCAACATTGAAGTTGACGGA
GCTCCGTGGCGTGTTTTGGAGTTTCTTCATGTGAAACCTGGGAAAGGAGC
AGCATTTGTGAGGACCAAGCTTCGCAATTATATGTCTGGAACCACTGTTG
AGAGAACTTTTCGTGCAGGGATTACGGTTGAAGAGGCAGATGTATTCAAG
GAAACCAAGCAATTCACGTACAAAGATGGCTCCATGTTTGTGTTTATGGA
TCTGACCACATTTGAAGAAGTTCGTCTTAATGAGACAGATGTCGGAGATA
AGAAAAAGTGGCTGAAAGAGGGAAATGGACTGCATTTGCTATTTCTGGAA
GGAA
back to top