FC931519

Overview
NameFC931519
Unique NameFC931519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_ACIC1 (Elongation factor P OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=efp PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKE 670
            ++ND+K G  +++DG  W V+EF HVKPGKG AFVRTKL++ ++G  V++TF AG+ V+ A V K T Q+ Y++G  FVFMD  T+++  +    VGD   +L E
Sbjct:    3 TTNDLKNGMTLDLDGELWNVVEFQHVKPGKGPAFVRTKLKHVLTGKVVDKTFNAGVKVDVATVDKRTMQYLYREGDSFVFMDTETYDQYHIPAQTVGDAANFLLE 107          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SALTO (Elongation factor P OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=efp PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWL 664
            ++ND+K G  + +DG  W V+EF HVKPGKG AFVRT L+N +SG  V++TF AG  VE A V K T Q+ Y DG  FVFMDL TF+++ +    VG+   +L
Sbjct:    3 TTNDLKNGMVLNLDGELWAVVEFQHVKPGKGGAFVRTTLKNVLSGKVVDKTFNAGTKVETATVDKRTMQYLYADGEDFVFMDLETFDQINVLGDTVGEAANYL 105          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_NOCSJ (Elongation factor P OS=Nocardioides sp. (strain BAA-499 / JS614) GN=efp PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKE 670
            ++ND+K G  + +DG  W V+EF HVKPGKG AFVRTKL+N  S  TV++TF AG  VE A V + T Q+ Y DGS +VFMD+ +++++ +    VG+ K +L E
Sbjct:    3 TTNDLKNGMVLNIDGQLWAVVEFQHVKPGKGPAFVRTKLKNVESNKTVDKTFNAGTKVETATVDRRTMQYLYNDGSSYVFMDVQSYDQLEIAPEIVGNAKNFLLE 107          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CLOPS (Elongation factor P OS=Clostridium perfringens (strain SM101 / Type A) GN=efp PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S +D++ G+  E+DG  + V++FLHVKPGKGAAFVRTKLRN + G   +RTF     ++EA + ++  Q+ Y DG ++ FMD  TFE++ LN   V D  K+LKE     + F +G
Sbjct:    3 SGSDLRKGTTFELDGQVYTVIDFLHVKPGKGAAFVRTKLRNVIMGGVTDRTFNPTDKLQEAIIERKEMQYLYSDGELYYFMDQETFEQIPLNHEKVEDAIKFLKENMNAVIKFYKG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CLOPE (Elongation factor P OS=Clostridium perfringens GN=efp PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S +D++ G+  E+DG  + V++FLHVKPGKGAAFVRTKLRN + G   +RTF     ++EA + ++  Q+ Y DG ++ FMD  TFE++ LN   V D  K+LKE     + F +G
Sbjct:    3 SGSDLRKGTTFELDGQVYTVIDFLHVKPGKGAAFVRTKLRNVIMGGVTDRTFNPTDKLQEAIIERKEMQYLYSDGELYYFMDQETFEQIPLNHEKVEDAIKFLKENMNAVIKFYKG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CLOP1 (Elongation factor P OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=efp PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S +D++ G+  E+DG  + V++FLHVKPGKGAAFVRTKLRN + G   +RTF     ++EA + ++  Q+ Y DG ++ FMD  TFE++ LN   V D  K+LKE     + F +G
Sbjct:    3 SGSDLRKGTTFELDGQVYTVIDFLHVKPGKGAAFVRTKLRNVIMGGVTDRTFNPTDKLQEAIIERKEMQYLYSDGELYYFMDQETFEQIPLNHEKVEDAIKFLKENMNAVIKFYKG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CARHZ (Elongation factor P OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=efp PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLE 700
            S+ND + G  IE+DG  ++V+EF HVKPGKG+ FVR+KLRN M+G  +E+TF AG  V +A V +   Q+ Y DG  F  MD+ T+++  L +   GD   ++KE   L +LF +
Sbjct:    3 STNDFRTGLTIELDGEVYQVIEFQHVKPGKGSPFVRSKLRNLMTGAVIEKTFNAGEKVPKAHVDRREVQYLYNDGDNFYCMDMETYDQFPLTKEQFGDAINYVKENTNLWVLFFK 117          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CLAMS (Elongation factor P OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=efp PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S+ DIK G  + +DG  W V+EF HVKPGKG AFVRTK++N MSG  V+RTF AG  +E   V +   Q+ Y DG  FVFMD + ++++ L+   VGD K ++ E   + +    G
Sbjct:    3 STADIKNGVVLNMDGQLWTVIEFQHVKPGKGGAFVRTKVKNVMSGKVVDRTFNAGAKIETETVDRRDFQYLYADGENFVFMDTSDYDQITLSAAQVGDAKNFMLENQDVTVALHNG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CLAM3 (Elongation factor P OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=efp PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S+ DIK G  + +DG  W V+EF HVKPGKG AFVRTK++N MSG  V+RTF AG  +E   V +   Q+ Y DG  FVFMD + ++++ L+   VGD K ++ E   + +    G
Sbjct:    3 STADIKNGVVLNMDGQLWTVIEFQHVKPGKGGAFVRTKVKNVMSGKVVDRTFNAGAKIETETVDRRDFQYLYADGENFVFMDTSDYDQITLSAAQVGDAKNFMLENQDVTVALHNG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_BACHK (Elongation factor P OS=Bacillus thuringiensis subsp. konkukian GN=efp PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S ND + G  I VD   W+VL+F HVKPGKGAAFVR+KLRN  +G+  E+TFRAG  VE+A +     Q+ Y  G   VFMD  T+E++ L E  +  + K+LKE   + ++  +G
Sbjct:    3 SVNDFRTGLTIAVDNGLWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKVEKAHIENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQG 118          
The following BLAST results are available for this feature:
BLAST of FC931519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 495
Match NameE-valueIdentityDescription
EFP_ACIC13.334e-2346.67Elongation factor P OS=Acidothermus cellulolyticus... [more]
EFP_SALTO4.354e-2350.49Elongation factor P OS=Salinispora tropica (strain... [more]
EFP_NOCSJ5.686e-2348.57Elongation factor P OS=Nocardioides sp. (strain BA... [more]
EFP_CLOPS5.686e-2344.83Elongation factor P OS=Clostridium perfringens (st... [more]
EFP_CLOPE5.686e-2344.83Elongation factor P OS=Clostridium perfringens GN=... [more]
EFP_CLOP15.686e-2344.83Elongation factor P OS=Clostridium perfringens (st... [more]
EFP_CARHZ5.686e-2344.35Elongation factor P OS=Carboxydothermus hydrogenof... [more]
EFP_CLAMS7.427e-2344.83Elongation factor P OS=Clavibacter michiganensis s... [more]
EFP_CLAM37.427e-2344.83Elongation factor P OS=Clavibacter michiganensis s... [more]
EFP_BACHK7.427e-2345.69Elongation factor P OS=Bacillus thuringiensis subs... [more]

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Properties
Property NameValue
Genbank descriptionC34106A03EF PostHarvP1 Citrus clementina cDNA clone C34106A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931519 ID=FC931519; Name=FC931519; organism=Citrus clementina; type=EST; length=704bp
GGCGTTCATTCTACTACTGTTTTATTCTCATTTTTTTCAAAAAAAAAATA
ATAATAGGGGAAGAAGGTATTGGCTGCTCTCAAGTCTCGATATGCTTTAG
GCGGTAGTACCCAGACTCTCATTCCGGGACACACTCCTTATCTAAGAGAG
CGTGTCGCGGCCTTCTGTATTTTGTTTGATAAAACCAAATATCATTTCTC
ACAGATAACCAACCACCATGGCGGGAACCGCCGCCACCGTTAATCTCTCA
TCAGCGCCCTATCTCCTCCGCCGTTCGTCATTTACTACACTCTCGTCAAA
GCCGTCCGTACTCCCAATGCGACCACGTTCCAAATTTCCCAGGATCTACG
CGTTTAGTAGCAACGATATCAAAGTGGGTTCCAACATTGAAGTTGACGGA
GCTCCGTGGCGTGTTTTGGAGTTTCTTCATGTGAAACCTGGGAAAGGAGC
AGCATTTGTGAGGACCAAGCTTCGCAATTATATGTCTGGAACCACTGTTG
AGAGAACTTTTCGTGCAGGGATTACGGTTGAAGAGGCAGATGTATTCAAG
GAAACCAAGCAATTCACGTACAAAGATGGCTCCATGTTTGTGTTTATGGA
TCTGACCACATTTGAAGAAGTTCGTCTTAATGAGACAGATGTCGGAGATA
AGAAAAAGTGGCTGAAAGAGGGAAATGGACTGCATTTGCTATTTCTGGAA
GGAA
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