FC931519

Overview
NameFC931519
Unique NameFC931519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15344 contig Ccv1_Contig15344:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_HELPJ (Elongation factor P OS=Helicobacter pylori J99 GN=efp PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 47/114 (41.23%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  350 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            A   +++K G  IE+ G P+R++E+ HVKPGKGAAFVR K+++++ G  +E+TF AG   EE ++ ++T Q+ Y DG  + FMD+ ++E++ LN++ VG+  KW+ +G  + +L
Sbjct:    2 AIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVL 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_HELPH (Elongation factor P OS=Helicobacter pylori (strain HPAG1) GN=efp PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 47/114 (41.23%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  350 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            A   +++K G  IE+ G P+R++E+ HVKPGKGAAFVR K+++++ G  +E+TF AG   EE ++ ++T Q+ Y DG  + FMD+ ++E++ LN++ VG+  KW+ +G  + +L
Sbjct:    2 AIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVL 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_HELPG (Elongation factor P OS=Helicobacter pylori (strain G27) GN=efp PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 47/114 (41.23%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  350 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            A   +++K G  IE+ G P+R++E+ HVKPGKGAAFVR K+++++ G  +E+TF AG   EE ++ ++T Q+ Y DG  + FMD+ ++E++ LN++ VG+  KW+ +G  + +L
Sbjct:    2 AIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVL 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_HELP2 (Elongation factor P OS=Helicobacter pylori (strain P12) GN=efp PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 47/114 (41.23%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  350 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            A   +++K G  IE+ G P+R++E+ HVKPGKGAAFVR K+++++ G  +E+TF AG   EE ++ ++T Q+ Y DG  + FMD+ ++E++ LN++ VG+  KW+ +G  + +L
Sbjct:    2 AIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVL 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_BACSU (Elongation factor P OS=Bacillus subtilis GN=efp PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLE 700
            S ND + G  IEVDG  WRV++F HVKPGKGAAFVR+KLRN  +G   E+TFRAG  V +A +  +T Q+ Y +G   VFMD +++E++ L+ T + ++ K+L E   +H++  +
Sbjct:    3 SVNDFRTGLTIEVDGGIWRVVDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRAGEKVAKAQIETKTMQYLYANGDQHVFMDTSSYEQLELSATQIEEELKYLLENMSVHIMMYQ 117          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_BACP2 (Elongation factor P OS=Bacillus pumilus (strain SAFR-032) GN=efp PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            S ND + G  IEVDG  WRV++F HVKPGKGAAFVR+KLRN  +G   E+TFRAG  V +A +  +T Q+ Y +G   VFMD +++E++ L+ET + D+ K+L E   + ++
Sbjct:    3 SVNDFRTGLTIEVDGGIWRVVDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRAGEKVAKAQIETKTMQYLYANGDQHVFMDTSSYEQLELSETQIKDELKYLLENMSVQIV 114          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_MACCJ (Elongation factor P OS=Macrococcus caseolyticus (strain JCSC5402) GN=efp PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S ND K G  IEVD   WRV+EF HVKPGKGAAFVR+KLRN  +G   E+TFRAG  V +A +  +  Q+ Y  G   VFMD  ++E++ L+E  +  + K+LKE   +H+   EG
Sbjct:    3 SVNDFKTGLTIEVDNGIWRVIEFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRAGEKVGKAQIDNKRMQYLYASGDQHVFMDTESYEQIELSEDTIEYELKFLKENMEVHIQMYEG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_GEOTN (Elongation factor P OS=Geobacillus thermodenitrificans (strain NG80-2) GN=efp PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S ND + G  IEVDG  WRVLEF HVKPGKGAAFVR+KLRN  +G   ERTFRAG  V  A +     Q+ Y +G + VFMD+ T+E++ L    +  + K+LKE   + ++  +G
Sbjct:    3 SVNDFRTGLTIEVDGEIWRVLEFQHVKPGKGAAFVRSKLRNLRTGAIQERTFRAGEKVNRAQIDTRKMQYLYANGDLHVFMDMETYEQIELPAKQIEYELKFLKENMEVFIMMYQG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_GEOKA (Elongation factor P OS=Geobacillus kaustophilus GN=efp PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            S ND + G  IEVDG  WRVLEF HVKPGKGAAFVR+KLRN  +G   ERTFRAG  V  A +     Q+ Y +G   VFMD+ T+E++ L    +  + K+LKE   + ++  +G
Sbjct:    3 SVNDFRTGLTIEVDGEIWRVLEFQHVKPGKGAAFVRSKLRNLRTGAIQERTFRAGEKVNRAQIDTRKMQYLYANGDQHVFMDMETYEQIELPAKQIEHELKFLKENMEVFIMMYQG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CAMJR (Elongation factor P OS=Campylobacter jejuni (strain RM1221) GN=efp PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 50/118 (42.37%), Postives = 80/118 (67.80%), Query Frame = 2
Query:  350 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            ++S  D+K G  IE+DG P++++E+ HVKPGKG AFVR K+++++ G  +E+TF AG   E  ++  +T Q+ Y DG    FMD  T+E+V +++ DVG+ KKW+ +G  + +LF  G
Sbjct:    3 SYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIKSFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGEAKKWMLDGMMVDVLFHNG 120          
The following BLAST results are available for this feature:
BLAST of FC931519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 495
Match NameE-valueIdentityDescription
EFP_HELPJ4.652e-2541.23Elongation factor P OS=Helicobacter pylori J99 GN=... [more]
EFP_HELPH4.652e-2541.23Elongation factor P OS=Helicobacter pylori (strain... [more]
EFP_HELPG4.652e-2541.23Elongation factor P OS=Helicobacter pylori (strain... [more]
EFP_HELP24.652e-2541.23Elongation factor P OS=Helicobacter pylori (strain... [more]
EFP_BACSU4.652e-2546.09Elongation factor P OS=Bacillus subtilis GN=efp PE... [more]
EFP_BACP24.652e-2548.21Elongation factor P OS=Bacillus pumilus (strain SA... [more]
EFP_MACCJ1.036e-2448.28Elongation factor P OS=Macrococcus caseolyticus (s... [more]
EFP_GEOTN1.036e-2448.28Elongation factor P OS=Geobacillus thermodenitrifi... [more]
EFP_GEOKA1.036e-2448.28Elongation factor P OS=Geobacillus kaustophilus GN... [more]
EFP_CAMJR1.036e-2442.37Elongation factor P OS=Campylobacter jejuni (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34106A03EF PostHarvP1 Citrus clementina cDNA clone C34106A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931519 ID=FC931519; Name=FC931519; organism=Citrus clementina; type=EST; length=704bp
GGCGTTCATTCTACTACTGTTTTATTCTCATTTTTTTCAAAAAAAAAATA
ATAATAGGGGAAGAAGGTATTGGCTGCTCTCAAGTCTCGATATGCTTTAG
GCGGTAGTACCCAGACTCTCATTCCGGGACACACTCCTTATCTAAGAGAG
CGTGTCGCGGCCTTCTGTATTTTGTTTGATAAAACCAAATATCATTTCTC
ACAGATAACCAACCACCATGGCGGGAACCGCCGCCACCGTTAATCTCTCA
TCAGCGCCCTATCTCCTCCGCCGTTCGTCATTTACTACACTCTCGTCAAA
GCCGTCCGTACTCCCAATGCGACCACGTTCCAAATTTCCCAGGATCTACG
CGTTTAGTAGCAACGATATCAAAGTGGGTTCCAACATTGAAGTTGACGGA
GCTCCGTGGCGTGTTTTGGAGTTTCTTCATGTGAAACCTGGGAAAGGAGC
AGCATTTGTGAGGACCAAGCTTCGCAATTATATGTCTGGAACCACTGTTG
AGAGAACTTTTCGTGCAGGGATTACGGTTGAAGAGGCAGATGTATTCAAG
GAAACCAAGCAATTCACGTACAAAGATGGCTCCATGTTTGTGTTTATGGA
TCTGACCACATTTGAAGAAGTTCGTCTTAATGAGACAGATGTCGGAGATA
AGAAAAAGTGGCTGAAAGAGGGAAATGGACTGCATTTGCTATTTCTGGAA
GGAA
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