FC931530

Overview
NameFC931530
Unique NameFC931530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.017e-57
Identity = 111/192 (57.81%), Postives = 130/192 (67.71%), Query Frame = 2
Query:   92 MGKDVEVAXXXXXXXXFSAK-DYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            M    EVA         +AK  Y DPPPAPL+D  ELGKWS YRA+IAEF+A            IGYK+Q       D C GVG LG+AW+FG  IF+LVYCT G+SGGHINPAVT GLF GRK+SL+R +LY+VAQCLGAI G G VK   K  Y+  GGGAN ++DGY+    LGAEI+GTF+LVYTVFS
Sbjct:    1 MASKEEVAVETVEGGAAAAKAPYWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQ---RATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFS 189          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.482e-56
Identity = 115/199 (57.79%), Postives = 129/199 (64.82%), Query Frame = 2
Query:   68 QNKNKREKMGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            +NK +  K+G +             + KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G K       +   C  VGI G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMV QCLGAICG G VK F    Y R GGGAN +  GY KG GLGAEIIGTFVLVYTVFS
Sbjct:    3 ENKEEDVKLGANKFRETQPLGTAAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKR------SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFS 195          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.482e-56
Identity = 108/172 (62.79%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G         +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y++ QCLGA+CG G VK FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFS
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSK------STSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFS 197          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.548e-56
Identity = 108/172 (62.79%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G         +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y++ QCLGAICG G VK FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFS
Sbjct:   35 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSK------STSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFS 200          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.758e-56
Identity = 108/172 (62.79%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G         ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFS
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSK------SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFS 197          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.323e-55
Identity = 108/172 (62.79%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY +PP AP+ + EEL  WSFYRA IAEF+A            +G       N +  +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YM  QCLGAICG G VK FQ+  Y   GGGAN +  GY KG GLGAEI+GTFVLVYTVFS
Sbjct:   31 KDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGV------NKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFS 196          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.463e-54
Identity = 104/172 (60.47%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            +DY +PP APL +  EL  WSFYRA IAEF+A            +G         +  +CG VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGL L RK+SL RA+ Y+V QCLGA+CG G VKAF  + Y   GGGAN ++ GY KG GLGAE++GTFVLVYTVFS
Sbjct:   37 RDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSK------SPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFS 202          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.259e-54
Identity = 106/173 (61.27%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY DPPPAPL+D  ELGKWS YRA IAEF A            IG K Q+         GG G+LGIAWAFGG+IF+LVYCTAGISGGH+NPAVTF + L R+VSL RA LY +AQC+GA+CG G  +A      Y R+GGGANELA GY+ G G+ AE++GTFVLVYTVFS
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE-------GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFS 177          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.707e-53
Identity = 108/173 (62.43%), Postives = 121/173 (69.94%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY +PPPAPL +  EL  WSFYRA IAEFIA            +G   ++       +C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMV Q LGAICG G VK F+ K  +    GGAN +A GY KG GLGAEI+GTF+LVYTVFS
Sbjct:   32 KDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESS------KCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFS 198          
BLAST of FC931530 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.814e-51
Identity = 103/172 (59.88%), Postives = 118/172 (68.60%), Query Frame = 2
Query:  149 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 664
            KDY +PPPAPL +  EL  WSFYR  IAEF+A            +G         +T +C  VGI GIAW+FGGMI  LVYCTAGISG HINPAVTFGLFL RK+SL RA+ Y++ QCLGAICG G VK FQ+  Y   GG  N +A GY KG GLGAEI+GTF+LVYTVFS
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSK------STSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFS 195          
The following BLAST results are available for this feature:
BLAST of FC931530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PIP27_ORYSJ7.017e-5757.81Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP1_SOLLC3.482e-5657.79Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP12_MAIZE3.482e-5662.79Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE4.548e-5662.79Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_ORYSJ7.758e-5662.79Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_ORYSJ1.323e-5562.79Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE1.463e-5460.47Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ3.259e-5461.27Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP2_PEA4.707e-5362.43Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_MAIZE9.814e-5159.88Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34106B03EF PostHarvP1 Citrus clementina cDNA clone C34106B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931530 ID=FC931530; Name=FC931530; organism=Citrus clementina; type=EST; length=664bp
GACCCATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCT
CCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAG
GATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAA
GGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGG
GCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTT
TTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGAC
TGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCA
TCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCC
GGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTT
GGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGT
GCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCA
TACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAA
CAAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCT
ACACTGTTTTCTCT
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