FC931534

Overview
NameFC931534
Unique NameFC931534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 2.380e-119
Identity = 210/229 (91.70%), Postives = 224/229 (97.82%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEG++LPHAILRLDLAGRDLTD LMKILTERGYMFTTTAEREIVRD+KEKL++VA+DYEQE+ET+K+SSS+EKNYELPDGQ+ITIGAERFRCPEVLFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP I
Sbjct:  143 SLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 6.924e-119
Identity = 211/229 (92.14%), Postives = 219/229 (95.63%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEG+ LPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKLAYVALDYEQEL+TA+SSSS+EK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEA GIHE TYNSIMKCDVDIRKDLYGN+VLSGGSTMFPGI DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP I
Sbjct:  142 SLYASGRTTGIVLDSGDGVSHTVPIYEGFTLPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDYEQELDTARSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIGDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGI 370          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 6.924e-119
Identity = 211/229 (92.14%), Postives = 219/229 (95.63%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEG+ LPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKLAYVALDYEQEL+TA+SSSS+EK+YELPDGQ+ITIGAERFRCPEVLFQPS IGMEA GIHE TYNSIMKCDVDIRKDLYGN+VLSGGSTMFPGI DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP I
Sbjct:  142 SLYASGRTTGIVLDSGDGVSHTVPIYEGFTLPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDYEQELDTARSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIGDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGI 370          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 6.924e-119
Identity = 212/229 (92.58%), Postives = 222/229 (96.94%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKL+Y+ALDYEQELET+K+SSSVEK++ELPDGQ+ITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSI
Sbjct:  143 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.181e-118
Identity = 209/229 (91.27%), Postives = 225/229 (98.25%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD +MKILTERGY FTTTAEREIVRD+KEKLAYVALD+EQE++TA++SSS+EK+YELPDGQ+ITIG+ERFRCPEVLF P+LIGME+AGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSI
Sbjct:  143 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYAFTTTAEREIVRDIKEKLAYVALDFEQEMQTAQNSSSLEKSYELPDGQVITIGSERFRCPEVLFNPALIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 2.015e-118
Identity = 211/229 (92.14%), Postives = 222/229 (96.94%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKL+Y+ALD+EQELET+K+SSSVEK++ELPDGQ+ITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSI
Sbjct:  143 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 3.436e-118
Identity = 210/229 (91.70%), Postives = 222/229 (96.94%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT+ ++KILTERGY FTTTAE+EIVRD+KEKLAY+ALD+EQELET K+ S+VEKNYELPDGQ+ITIGAERFRCPEVL+QPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN VLSGGSTMFPGIADRMSKEI ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSI
Sbjct:  143 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMVKILTERGYSFTTTAEKEIVRDVKEKLAYLALDFEQELETTKTGSAVEKNYELPDGQVITIGAERFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNHVLSGGSTMFPGIADRMSKEIQALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 423.32 bits (1087), Expect = 5.862e-118
Identity = 214/230 (93.04%), Postives = 221/230 (96.09%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYS-VWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTE+     TTAEREIVRDMKEKLAYVALDYEQELETAK  S+VEKNYELPDGQ+ITIGAERFRCP+VLFQPS+IGME+AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYS +WIGGSILASLSTFQQMWISKGEYDESGPSI
Sbjct:  142 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTEKSICHYTTAEREIVRDMKEKLAYVALDYEQELETAKRRSAVEKNYELPDGQVITIGAERFRCPQVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSDLWIGGSILASLSTFQQMWISKGEYDESGPSI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 4.962e-117
Identity = 209/229 (91.27%), Postives = 219/229 (95.63%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDMKEKLAY+ALDY+QE+ETAK+SSSVEK+YELPDGQ+ITI A+RFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRM +    LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSI
Sbjct:  143 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYDQEMETAKTSSSVEKSYELPDGQVITIAADRFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMRQGNHCLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSI 371          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 419.853 bits (1078), Expect = 6.481e-117
Identity = 204/229 (89.08%), Postives = 221/229 (96.51%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKLAYVALD+EQE++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  142 SLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSI 370          
The following BLAST results are available for this feature:
BLAST of FC931534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
ACT2_ARATH2.380e-11991.70Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT7_ORYSJ6.924e-11992.14Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI6.924e-11992.14Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT12_ARATH6.924e-11992.58Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACT_COLSC1.181e-11891.27Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT4_ARATH2.015e-11892.14Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT6_SOLTU3.436e-11891.70Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT1_DAUCA5.862e-11893.04Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT1_SORBI4.962e-11791.27Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACTA_PHYPO6.481e-11789.08Actin, plasmodial isoform OS=Physarum polycephalum... [more]

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Properties
Property NameValue
Genbank descriptionC34106B07EF PostHarvP1 Citrus clementina cDNA clone C34106B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931534 ID=FC931534; Name=FC931534; organism=Citrus clementina; type=EST; length=690bp
ATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTG
ATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTCCTCAT
GCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGAT
GAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGG
AAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTAT
GAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTA
TGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTT
GCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGT
ATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATATTAG
AAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCC
CCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGC
AGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTG
GATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGA
TCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGT
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