FC931534

Overview
NameFC931534
Unique NameFC931534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP10_BOVIN (Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 71/260 (27.31%), Postives = 117/260 (45.00%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAERE------------IVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELP----------DGQII--TIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA--------PPERKYSV-WIGGSILASL-STFQQMWISKGEYDESG 679
            +L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+  + T  A+ +            I+ D+K +  +V+ D ++ L    +  +++ N E P          DG+ I   +G+ R    E+LF+      E   +     +S+M+C +D RK L  N+V+ GG++M PG   R+  EI  L       K +A        PP +   V W+GG+I  +L        +SK  Y+++G
Sbjct:  127 ALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGILEDIKVRTCFVS-DLKRGLNIQAAKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQD---NEEKSVATLILDSLMQCPIDTRKQLAENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLATKTFRIHTPPAKANCVAWLGGAIFGALQDILGSRSVSKDYYNQTG 382          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP10_HUMAN (Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 68/260 (26.15%), Postives = 120/260 (46.15%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAERE------------IVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELP----------DGQIIT--IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL--------APSSMKIKVVAPPERKYSV-WIGGSILASL-STFQQMWISKGEYDESG 679
            +L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+  + T+ A+ +            ++ D+K +  +V+ D ++ L+   +  +++ N E P          DG+ I   +G+ R    E+LF+      E   +     +S+++C +D RK L  N+V+ GG++M PG   R+  EI  L        A  +   ++  PP +   V W+GG+I  +L        +SK  Y+++G
Sbjct:  127 ALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVS-DLKRGLKIQAAKFNIDGNNERPSPPPNVDYPLDGEKILHILGSIRDSVVEILFEQD---NEEQSVATLILDSLIQCPIDTRKQLAENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKANCVAWLGGAIFGALQDILGSRSVSKEYYNQTG 382          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP10_MOUSE (Actin-related protein 10 OS=Mus musculus GN=Actr10 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 67/260 (25.77%), Postives = 118/260 (45.38%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAERE------------IVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELP----------DGQII--TIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP--------SSMKIKVVAPPERKYSV-WIGGSILASL-STFQQMWISKGEYDESG 679
            +L   G  + +VLD G   S  +PIYEG  + +    L L G+ L   L   L E+  + T  A+ +            ++ D+K +  +V+ D ++ L+   +  +++ N E P          DG+ I   +G+ R    E+LF+      E   +     +S+++C +D RK L  N+V+ GG++M PG   R+  EI  L           +   ++  PP +   V W+GG++  +L        ISK  Y+++G
Sbjct:  127 ALLTLGINSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGGKALHKELETQLLEQCTVDTGAAKGQSLPSVMGSVPEGVLEDIKVRTCFVS-DLKRGLQIQAAKFNIDGNNERPTPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQD---NEEKSVATLILDSLLQCPIDTRKQLAENLVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKNFRIHTPPAKANCVAWLGGAVFGALQDILGSRSISKEYYNQTG 382          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 42/163 (25.77%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  191 AEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 679
            A+ E + + ++ L++  ++++     A  + S  +NY+L        G E  R PE+LFQPS+IG   AG+ E     +       ++ +  ++ L+GG   F G+ +R+++E   + P   K  +    +   S W+G  + AS   F Q   ++ +Y E G
Sbjct:  478 ADNEQLLEFEKILSHYDVNFDDG--NAVQTQSAAENYQLH------FGVEDIRVPEILFQPSMIGSPEAGLAELIAFVLKLFTAQEQQRMVEHVYLTGGCAQFRGLKERLAREFLEMRPFQSKFSIYESDDHTLSAWLGACVQASQPNFGQTLTTRKDYQEHG 632          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 45/180 (25.00%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  143 ALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 682
            +L K L E    FT     + + D +  L Y       + +     + V + ++L       +  E+ R PEV+F PS++G++ AGI E   + + +  ++ ++ L  N++++GG    PG+  R+ +E+T++ P    I V          W G S  +    F+   +++ EY E GP
Sbjct:  539 SLEKQLLEYDSQFTQANTYDTLNDPRATLLYAFTRGVSDFDV----NDVAQAFQLH------LNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP6_DEBHA (Actin-like protein ARP6 OS=Debaryomyces hansenii GN=ARP6 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 63/247 (25.51%), Postives = 100/247 (40.49%), Query Frame = 2
Query:   32 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAK-------------SSSSVEKNYELP-----DGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNS------------IMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPER-KYSVWIGGSILASLSTFQQMWISKGEYDESG 679
            +V+DSG   +  VPI         + +L + G  L   L +I++ R Y      E  ++  +KEK  ++A D+E+ L   K             +++   K  + P     D Q + +  ERF  PE  + P +I         T  N+            IM C    +  L GNI+  GG+T  PG  DR+  E+    P    ++V         + W GG+ L +      + ISK +Y E G
Sbjct:  152 LVVDSGYSGTWIVPIIYQNVYWKGVKKLPIGGAALNGLLREIISFRHYDIAD--EPVLINTIKEKTCFMATDFEKSLANRKKYRCEFILPDFKTTTTGFVKTKDTPIDTTGDVQSLALIDERFTIPESFYHPEIIFDNTTSSTSTIQNASFKNITDLVVECIMSCPKVTQPLLSGNIITVGGNTNLPGFTDRLRHELVKELPIDWHVQVKETEHNPDEASWFGGAQLTNDEIINNISISKKDYFEHG 396          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP4_CANAL (Actin-related protein 4 OS=Candida albicans GN=ARP4 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  398 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 679
            GI +   +++   D+D+R  L  NI+++GG ++   + +R+  E++   P  +KI++ A     ER    WIGGS+LASL TF QMW++K EY+E G
Sbjct:  364 GISQLISHTLSNIDIDLRASLANNIIVTGGVSLISQLTERLYLELSNNNPG-LKIRLHAVGNSTERINQAWIGGSVLASLGTFHQMWVTKEEYNEVG 459          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACT_SPOLI (Actin (Fragment) OS=Spodoptera littoralis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 100
            SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH
Sbjct:  132 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 164          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 2
Query:  284 SVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 679
            S  +NY+L        G E  R PEVLFQPS+IG   AG+ E     +       ++ L  ++ L+GG   F G+ +R+ KE+  + P   K  +    E   S W+G  + A   TF Q   ++ ++ E G
Sbjct:  504 SAAENYQLH------FGVENIRVPEVLFQPSMIGCSEAGLAELIAFVLKLFPAAEQQRLVEHVYLTGGCAQFKGLKERLIKELMEMRPFQSKFAIYESDEPTLSAWLGACVHAGEPTFGQTLTTRQDHQEHG 629          
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  329 IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMK---------CDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWISKGEYDESGP 682
            +  ER R PEV+FQP++ G + AGI E +   ++K             I  D+  N++++GG+   PG+ +R+ KE T   P+   I V    +     W G + LA +   +++  ISK EY+E GP
Sbjct:  614 LNVERIRVPEVIFQPTMGGQDQAGICELSETILLKKFGSQPGKLSQTSI--DMVNNVLITGGNAKVPGLKERIVKEFTGFLPTGTNITVNMSSDPSLDAWKGMAALARNEEQYRKTVISKKEYEEYGP 739          
The following BLAST results are available for this feature:
BLAST of FC931534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
ARP10_BOVIN2.998e-1327.31Actin-related protein 10 OS=Bos taurus GN=ACTR10 P... [more]
ARP10_HUMAN5.114e-1326.15Actin-related protein 10 OS=Homo sapiens GN=ACTR10... [more]
ARP10_MOUSE8.723e-1325.77Actin-related protein 10 OS=Mus musculus GN=Actr10... [more]
ARP5_DROPS1.139e-1225.77Actin-related protein 5 OS=Drosophila pseudoobscur... [more]
ARP5_SCHPO2.538e-1225.00Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP6_DEBHA3.315e-1225.51Actin-like protein ARP6 OS=Debaryomyces hansenii G... [more]
ARP4_CANAL3.315e-1238.14Actin-related protein 4 OS=Candida albicans GN=ARP... [more]
ACT_SPOLI4.329e-12100.00Actin (Fragment) OS=Spodoptera littoralis PE=2 SV=... [more]
ARP5_DROME5.654e-1231.06Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP5_YEAST2.806e-1132.03Actin-related protein 5 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC34106B07EF PostHarvP1 Citrus clementina cDNA clone C34106B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931534 ID=FC931534; Name=FC931534; organism=Citrus clementina; type=EST; length=690bp
ATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTG
ATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTCCTCAT
GCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGAT
GAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGG
AAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTAT
GAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTA
TGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTT
GCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGT
ATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATATTAG
AAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCC
CCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGC
AGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTG
GATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGA
TCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGT
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