FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: SMP1_YEAST (Transcription factor SMP1 OS=Saccharomyces cerevisiae GN=SMP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTID 301
            MGR KIEI+ I++  NR VTF KR+ GL KKA+ELSVLC  ++A+I+  S    YEYS+ ++ + ++
Sbjct:    1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYSSVDMSNLLN 67          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MCM1_YEAST (Pheromone receptor transcription factor OS=Saccharomyces cerevisiae GN=MCM1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 2
Query:   83 PKNSGPMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYK-----KAC----------------SDNSNSGTVTEINAQYYQQESAKLRQQI-QMLQNSNRHLMGDSLSSLTVKE 469
            P N+G    R KIEIK IEN T R VTF KR++G++KKA+ELSVL   +V L+V S  G +Y +S       + + +     +AC                 D+ +     ++  Q  QQ+  + +QQ+     NS  HL  D + +  +K+
Sbjct:    9 PTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNLIQACLNAPDDEEEDEEEDGDDDDDDDDDGNDMQRQQPQQQQPQQQQQVLNAHANSLGHLNQDQVPAGALKQ 160          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 2
Query:   86 KNSGPMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRY 307
            K    +GR KI + +I+  ++RQVTF KRR GL KKA EL  LC AE+ +IVFS   + + + + ++ S +DRY
Sbjct:   57 KKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRY 130          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
SMP1_YEAST9.395e-1249.25Transcription factor SMP1 OS=Saccharomyces cerevis... [more]
MCM1_YEAST2.734e-1132.24Pheromone receptor transcription factor OS=Sacchar... [more]
AGL61_ARATH2.734e-1144.59Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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