FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 83/177 (46.89%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRG ++++RIEN  NRQVTF KRRNGLLKKA+E+SVLCDA+VALIVFS++G+LYE+ S+S++   ++RY++   D          + + +  E   L+ ++  LQ S R L+G+ L +LT+KEL+QLE++LE  +  IRSKK+++L   I  LQK+E  L+N++  L+ K+ E E+
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ-KLMETEK 176          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 83/177 (46.89%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            MGRG ++++RIEN  NRQVTF KRRNGLLKKA+E+SVLCDA+VALIVFS++G+LYE+ S+S++   ++RY++   D          + + +  E   L+ ++  LQ S R L+G+ L +LT+KEL+QLE++LE  +  IRSKK+++L   I  LQK+E  L+N++  L+ K+ E E+
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ-KLMETEK 176          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.633e-38
Identity = 85/192 (44.27%), Postives = 127/192 (66.15%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELNAI 673
            MGRG++E+K IEN  NRQVTF KRR  LLKKAYELSVLCDAEVALI+FS+RG+LYE+ S++++  T+++Y+K C+  S   T+     Q  QQE  KL+ +++ LQ S R+L+G+ L  L  KEL+QLE +L+  + +IRS + + +L ++  LQ+RE  L   +  L+ +  E  +  Q  +      +A+
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQK-CNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAV 191          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 83/187 (44.39%), Postives = 123/187 (65.78%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQ 658
            MGRGK+++KRIEN  NRQVTF KRRNGLLKKA+E+SVLCDAEVA IVFS +G+LYEY ++S +   ++RY++         +    +   +  E  KL+ +I+ +Q  ++HLMG+ L SL +KEL+QLE +LE  +  I S+K  ++L  I  LQK+E  L+ E+  L+ ++ E ++  +     GQ
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQ 187          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 83/183 (45.36%), Postives = 126/183 (68.85%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTI----DRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQ 637
            MGRGK+++KRIENT NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LY+Y+  +    I    +RY  A     ++ + T+ N   +  E  KL+ +++ +Q   +HLMG+ L SL +KEL+QLE +LE  +  IRS+K +++L  I  LQ++E  L+ E+  L+ ++ E ++ Q+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGN---WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQK 180          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.302e-37
Identity = 90/183 (49.18%), Postives = 125/183 (68.31%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYY----QQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQ 634
            MGRG++E+KR+EN  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ S S++  T++RY+K C+  +  G VT   A       QQE  KL+ + + LQ S R+LMG+ L  L+ K+L+ LE +L+  + +IRS + + +L ++  LQ++E  L   +  LR     ME +Q
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK-CNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALR---QRMEGYQ 179          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.700e-37
Identity = 85/195 (43.59%), Postives = 132/195 (67.69%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQ------ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQEL 664
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S  ++  T+++Y+K     S +G  T +  +  +Q      E  KL+ +++ LQ + R+L+G+ L SL +KEL+ LE +L+  +  +R+ + + L+ ++  LQ++E  +   + CLR K+      +++N V GQ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKC----SYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKL------EESNHVRGQQV 185          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.700e-37
Identity = 85/195 (43.59%), Postives = 132/195 (67.69%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQ------ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQEL 664
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S  ++  T+++Y+K     S +G  T +  +  +Q      E  KL+ +++ LQ + R+L+G+ L SL +KEL+ LE +L+  +  +R+ + + L+ ++  LQ++E  +   + CLR K+      +++N V GQ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKC----SYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKL------EESNHVRGQQV 185          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.700e-37
Identity = 85/192 (44.27%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKRE--IELENESVCLRIKIAEMERFQQANMVTGQELNA 670
            MGRGKI IKRI+NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY++S+S+++S I+RY++A  ++          A+++Q+E   LRQQ+Q L ++NR L+G+ +S+ TV++L+ L+N++E  +  IR+KK ++L  EI  L ++   ++ EN  +  +  IA      Q N+   ++LN+
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMS-EAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIA-----HQRNIELHKKLNS 186          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.700e-37
Identity = 83/183 (45.36%), Postives = 125/183 (68.31%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTI----DRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQ 637
            MGRGK+++KRIEN  NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LYEY+  +    I    +RY  A     ++ + T+ N   +  E  KL+ +++ +Q   +HLMG+ L SL +KEL+QLE +LE  +  IRS+K +++L  I  LQ++E  L+ E+  L+ ++ E ++ Q+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGN---WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQK 180          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
MAD18_ORYSJ5.844e-3846.89MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI5.844e-3846.89MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL9_ARADE7.633e-3844.27Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MAD15_ORYSJ9.969e-3844.39MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD14_ORYSI9.969e-3845.36MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MTF1_PEA1.302e-3749.18MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MADS7_ORYSJ1.700e-3743.59MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI1.700e-3743.59MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MAD25_ORYSJ1.700e-3744.27MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD14_ORYSJ1.700e-3745.36MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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