FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.221e-37
Identity = 80/176 (45.45%), Postives = 126/176 (71.59%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            MGRGK+ ++RIEN  +RQVTF KRRNGLLKKAYELS+LCDAEVAL++FS  GRLY++ S+SN+  T++RY++    + ++   T    Q   QE   L+  +++LQ S R+L+G+ L+ L   EL+QLE+++ R + +IRS+K ++LL E+  L+++E  L++ +  L+ K+ E++
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEID 176          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 85/180 (47.22%), Postives = 126/180 (70.00%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKK----ACSDN--SNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S+S++  T++RY+K    A   N  S      E+++   QQE  KL+++   LQ + R+L+G+ L  L+ KEL+ LE +L+  + +IR+ + + +L ++  LQ +E  L   +  LR+++A+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSS---QQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD 177          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 4.947e-37
Identity = 79/192 (41.15%), Postives = 131/192 (68.23%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN-SNIRSTIDRYKK-ACSDNSNSGTVTEINAQ-YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELN 667
            MGRG++E+KRIEN  NRQVTF KRR GLLKKA E+SVLCDAEV+LIVFS +G+L+EYS+ S +   ++RY++ + ++       + +NAQ  +  E ++L+ +I++L+ + RH +G+ L  +++K+L+ LE +LE  +  IRS+K++++   +  LQ++E E++ E+  L  +I E E   +      ++LN
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLN 192          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 83/176 (47.16%), Postives = 126/176 (71.59%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS-NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            M RG+ E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE++++ +++ TIDRYK    D+ N+ T+ + + Q  + ++  L ++++ L  S R ++G++L   +++EL+ LE +LE+ + +IR KK E+L  +I  L+++E  L  ++  LR K   +E
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQ-DIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLE 175          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 84/181 (46.41%), Postives = 126/181 (69.61%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDN-------SNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S+S++  T++RY+K C+         S      E+++   QQE  KL+++   LQ + R+L+G+ L  L+ KEL+ LE +L+  + +IR+ + + +L ++  LQ +E  L   +  LR+++A+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQK-CNYGPPEPNVPSREALAVELSS---QQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLAD 177          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 84/180 (46.67%), Postives = 123/180 (68.33%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKK---ACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            MGRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAE+AL++FS+RG+LYE+  S S +  T+D+Y+K   A  D + S      + Q   Q+  KL+ ++++LQ+S RHL+G+ LS + V EL+ LE +++  + +IRS K   +L ++  L+ +E  L   +  LR K+ + +
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAK----DLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSD 176          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.439e-37
Identity = 80/183 (43.72%), Postives = 129/183 (70.49%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSN-SGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANM 646
            MGRGKI I+RI+++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FSS G+LY++++S+++S IDRY K+  +        +E+  +++Q+E+A LRQ++  LQ ++R +MG+ L+ L+V EL  LEN++E  +  IR +K ++L  EI+ L ++   +  E++ L  K+   +R  Q N+
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEV--KFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKV---QRIHQENV 178          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.102e-36
Identity = 87/178 (48.88%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNSNIRSTIDRYKKACSDNS---NSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEM 622
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ S SN+  T++RY+K CS  S   N+    E+   Y  +E  KL+ + + LQ   R+L+G+ L  L  KEL+QLE +L+  + ++R  K + +L ++  LQ +E  L + +  L +K+ +M
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQK-CSYGSIEVNNKPAKELENSY--REYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDM 175          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 83/176 (47.16%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS-NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            M RG+ E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE++++ +++ TIDRYK    D+ N+ T+ + + Q  + ++  L ++++ L  S R ++G++L   +++EL+ LE +LE+ +  IR KK E+L  +I  L+++E  L  ++  LR K   +E
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQ-DIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLE 175          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 77/158 (48.73%), Postives = 114/158 (72.15%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREI 574
            MGRGKIEIKRI+N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY++++S+++S I+RY +   D   +   +   A+ +QQE+A LRQQ+  LQ  +R L+G  LS L V++L+ LE++LE  +  IR +K  +++ +I+ L ++ +
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMNASS-EAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
MAD34_ORYSJ2.221e-3745.45MADS-box transcription factor 34 OS=Oryza sativa s... [more]
SEP3_ARATH2.900e-3747.22Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
CAL_ARATH4.947e-3741.15Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD56_ORYSJ6.461e-3747.16MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL9_SINAL6.461e-3746.41Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL3_ARATH6.461e-3746.67Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL21_ARATH8.439e-3743.72Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
SEP2_ARATH1.102e-3648.88Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MAD56_ORYSI1.439e-3647.16MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD23_ORYSJ1.439e-3648.73MADS-box transcription factor 23 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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