FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 68/168 (40.48%), Postives = 109/168 (64.88%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN-SNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCL 601
            MGR K+EIKRIEN ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +S+  N+   +DRY K  +D        ++ A  +Q ++       ++L+  +  L+G ++ ++++  L QLE  LE  ++  R+KK E++L  +E L+++E  L+ E+  L
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD--------DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVL 160          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 71/196 (36.22%), Postives = 110/196 (56.12%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRY-----------KKACSD-----------NSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEM 622
            M R + EI+RIE+   RQVTF KRR GL KKA EL+VLCDA+VAL+VFSS G+L ++++SN+   ID+Y           K+   D            +NS     +  Q    + + L +Q+       R + G+ L  L+V+EL+Q+E  LE G+ R+   K +  + EI  LQ++ I+L  E++ LR ++ ++
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQV 196          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 61/151 (40.40%), Postives = 100/151 (66.23%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAE 547
            MGRGKIEIKRIEN  NR VTF KRRNGL+KKA E++VLCDA+VALI+F+S G++ +Y   + ++ + +D+Y+K      +   + +   +    E  +++++   LQ   RHL G+ + SL +K L  +E+ +E G+ ++R  + E+L+++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKL-----SGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISK 146          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 67/177 (37.85%), Postives = 111/177 (62.71%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            MGRGKIEIKRIEN++NRQVT+ KRRNG++KKA E++VLCDA+V+LI+F + G+++EY   ++ +   +D Y+K     ++   + +   +    E  +++++   +Q   RHL G+ ++SL  KEL  LE  L  G++ I +K+ E+L      ++K +  LE E   L+  + + E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK-----TSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEIL----RMVRKNDQILEEEHKQLQYALHQKE 168          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 65/185 (35.14%), Postives = 113/185 (61.08%), Query Frame = 2
Query:  107 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQES------AKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR--IKIAEMERFQQ 637
            R +I I+RI+N   RQVTF KRR GL KKA ELS+LCDAEV L+VFS+ G+L++++++++   IDRY      NS+S T+          +       A+L++++       R + G+ L  L V++L++LE  LE G+  +   K + +L EI+ L+++ ++L  E++ L+  ++++ M R ++
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRY------NSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25
Identity = 63/165 (38.18%), Postives = 102/165 (61.82%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHL-------MGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKR 568
            MGRGKIEIKRIEN TNRQVT+ KRR G++KKA EL+VLCDA+VA+I+FSS G+ +E+   +++I+   DRY++A            I    + ++   +++ +  L++ NR+L       MG+ L  L   EL+ LE  ++  +  +R +K+ ++  + E  +K+
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK 153          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 66/164 (40.24%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNI--RSTIDRYKKACS-DNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELE 583
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA EL+VLCDA+V++I+ SS G+L+E+ + +I  +   D Y+K    D  NS      + +  Q++  KL++  + L+   R  MG+SL+ L  ++L++L   ++  +  IR +K++++  +IE  +K+   +E
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNS------HYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVE 158          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 65/163 (39.88%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKKACSDNSNSGTVTEIN---AQY--YQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKR 568
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA+EL+VLCDA V++I+FSS  +L+EY   N+  +  +D Y+          T+++++    QY   Q+   KL +  + L+   +  +G+ L  L ++EL++LE+ +E     +R +K + L  +IE  +K+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQ----------TISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKK 153          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSD-NSNSGTVT-EINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME 625
            MGRGKIEIKRIEN+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y      S      +      +NSG +  +   +    E  +++++   +Q   RH+ G+ L+SL  KEL  +E  L  G   +R K    ++      ++ E  LE+E   L  ++ + E
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQE 173          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.651e-24
Identity = 77/190 (40.53%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIR--STIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFL--QKREIELENESV--CLRIKIAEMERFQQANMVT 652
            MGRGKIEIK+IEN T RQVTF KRR GL+KK  ELS+LCDA + LIVFS+ G+L E+ +   R    IDRY      N         + +    E   LR++   L+   R   G  L+S+   EL  LE +LE  + ++R +K+E++  ++E L  ++R +E +N ++   L    A ME FQQA + T
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRY---LHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAME-FQQAGIDT 186          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
FLC_ARATH3.554e-2740.48MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MAD55_ORYSJ2.303e-2636.22MADS-box transcription factor 55 OS=Oryza sativa s... [more]
PIST_ARATH3.008e-2640.40Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS2_PETHY3.008e-2637.85Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD47_ORYSJ5.132e-2635.14MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD16_ORYSJ1.950e-2538.18MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS1_PETHY4.344e-2540.24Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH5.674e-2539.88Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MADS4_ORYSJ9.678e-2538.42MADS-box transcription factor 4 OS=Oryza sativa su... [more]
TT16_ARATH1.651e-2440.53Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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