FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.651e-24
Identity = 62/169 (36.69%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSL-TVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQK--REIELENESVC 598
            MG+GKIE+KRIE+ T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ +  +      ++   +  +     T  + +    E  +LR +I  L+ S R   G+ LSS+ TV EL QL+ +LE  ++++ ++K E++  ++E +++  + +  +N  +C
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLC 169          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 63/163 (38.65%), Postives = 101/163 (61.96%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELE 583
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA+ELSVLCDA+V++I+ SS  +L+EY    +  +   D+Y+KA   +  S      + +  Q+   KL +  + L+   R  MG+SL+ L  +++  L   ++  +  IR +K++++  +I+  +K+   +E
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSS-----HYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVE 158          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 63/174 (36.21%), Postives = 107/174 (61.49%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE-YSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAE 619
            MGR K+EIKRIEN ++RQVTF KRRNGL++KA +LS+LC++ +A++V S  G+LY+  S  N+   IDRY+   +D   +  + E    Y       L++ ++++Q+    L   ++ + +V  L  LE +LE  ++  R++K E+++ E++ LQK E  L  E+  L  ++ +
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDLAEKTRNY-----LPLKELLEIVQSK---LEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGK 166          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 66/190 (34.74%), Postives = 107/190 (56.32%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNS--NIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEME-RFQQANMVTGQE 661
            MGRGK+EI++IEN TNRQVTF KRRNG++KKA EL+VLCDA+V+L++ SS  +L+ Y +   +++   D Y+K          +     +  Q++  K+ +   +L+      MG  L  LT+ EL  L+  +E  I +IR+KK+  +  +    +K+   LE     L   + E+E +F+      G++
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI-----EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL---VMELEAKFRGPQFAIGED 182          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.183e-22
Identity = 68/181 (37.57%), Postives = 105/181 (58.01%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN---SNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQ---QIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQK--REIELENESVCLRIKIAE 619
            MGRG+ EIKRIEN T RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ G+LY + +    ++R  ++RY+        + T T++ A   Q+  A+L +      +L+   R +  D     TV  L+ LE+ LE  + ++RS+K   +  EI +LQ   R  + E   +C +I  A+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYE--------ATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNIIRGRQEERYGLCDKIAHAQ 173          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 56/140 (40.00%), Postives = 94/140 (67.14%), Query Frame = 2
Query:  179 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNI--RSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 592
            GLLKKA EL++LCDA++ +I+FSS G+++E+S+  I  R  IDRY+K    + N   V + N Q Y  E  +++ +I  LQ + RH  G+ L+SLT+ E+ QLE +LE  + ++RS+K ++L  +++ L+++E  LE ++
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKL---SGNCAPVYD-NQQVYC-EITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQN 136          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQY 367
            MGR KI I++I N  NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS  +L++YS+ ++   + RY    +DN+++      N  Y
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY----TDNTDNTRKNLTNQDY 87          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEI 355
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  RL++Y+++++   + +Y +  S+   S T T+I
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTE-YSEPHESRTNTDI 84          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 42/85 (49.41%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEI 355
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++Y+++++   + +Y +  ++   SGT ++I
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE-YNEPHESGTNSDI 84          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTI---DRYKKACSDNSNSGTVTEINAQYYQ 373
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++Y+++++   +     Y +     +NS  V  +N + ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHR 94          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
MAD30_ORYSJ1.651e-2436.69MADS-box transcription factor 30 OS=Oryza sativa s... [more]
DEFA_ANTMA2.384e-2338.65Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AGL31_ARATH3.113e-2336.21Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
CMB2_DIACA5.310e-2334.74MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD32_ORYSJ1.183e-2237.57MADS-box transcription factor 32 OS=Oryza sativa s... [more]
AP32_ASAEU2.914e-2140.00MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
SRFC_DICDI7.427e-1748.31Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN3.686e-1651.76Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2A_PIG4.814e-1649.41Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_RAT6.287e-1644.68Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
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