FC931537

Overview
NameFC931537
Unique NameFC931537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931537_ssr70 microsatellite FC931537_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:7..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.780e-56
Identity = 109/209 (52.15%), Postives = 142/209 (67.94%), Query Frame = 1
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPL+TV   + +      S + LP V +  IRPD+V F+   + +N RQ +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGG MFAP K++RRWHR +N+ QKRY           P+L+ ARGH I+ V E+PLVVSD  ES  KT  A+  L++   +AD EK  +S+  R GKGK+RNR++  + GP+V+
Sbjct:    4 RPLVTVYDEKYEAT---QSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = 1
Query:  247 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV--------VSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            KAG Q SA SWGTGRAV+RIPR+ G G+ R  QGAFGNM R G MF+P K +R+W RK     +R+           P+LV ARGH I  VP++P V         S S   ++KT  A+ +LK+I AY+D  K   S+ IR G+GKMR R+   RKGPLVV
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVV 164          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 71/206 (34.47%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            I V SLEG+    A   + LP++     RPD++     +      QP+     AG +TSA+S+G GR V+ +PR+  G      + AF     GGR   P +  + +H +IN  ++R              LV ARGH+IE VP++PLVV D    +++T+   +V +++G   D  +A++ + IR GKGKMR R+Y + +GPL+V
Sbjct:    3 IKVYSLEGE----AIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTPRGPLIV 199          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = 1
Query:   97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGG-RMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V +LEG+       TV LP   +  +R D++         N RQPY    +AG +TSAESWG G  V+ +PRV G     A + A      GG +  APT   + W +++N  ++R            P  V  RGH I+ VP +P+VV D  +S+ K     +  K +G +AD E+AK ++ IR GKGK R RRY+  K  L+V
Sbjct:    5 VFNLEGEEV----DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTP-EKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIV 204          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 66/204 (32.35%), Postives = 108/204 (52.94%), Query Frame = 1
Query:   97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V S+EG++  +    + LP +     RPD++     +      QP+    +AG +TSA+ WG+GR  +R+PR+  G      + AF  M  GGR   PT+  +  H KIN+ ++R+             LV  RGH++  + ++P++V D   SV+ T    ++ + +G Y D  +AK+ + IR G+GK R R+Y   KGPL+V
Sbjct:    5 VYSMEGEVKEE----IELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEGKRIRAGRGKTRGRKYKKVKGPLLV 199          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 66/206 (32.04%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            I V SL+GD+  +    + LP++ +   RPD++     ++     QP+     AG +T+AES+G+GR  + +PRV G     + + AF     GGR   P ++   +H KIN  ++               LV  RGH++  + ++P V+ D  E+V+ T    ++ K +G   D  +AK  + I+ GKGK+R R+Y + KGPLVV
Sbjct:    4 INVYSLKGDITEE----IELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 71/205 (34.63%), Postives = 106/205 (51.71%), Query Frame = 1
Query:   97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V++L G++A +    + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G    R  Q        GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T   +  L  +G YAD E+AK S+ +R G+G MR RRY  RK  L+V
Sbjct:    5 VRTLTGEIAHE----IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNGSRVARVPQAT------GGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRAGRGTMRGRRYKQRKSVLIV 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 76/206 (36.89%), Postives = 103/206 (50.00%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD E+AKD   IR G+GK+R R+YI  K  LVV
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 67/179 (37.43%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  172 IRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            IRPD++   + +      QP  V   AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +   A K+ + +G + D E+A +   IR GKGKMR RRY   K  LVV
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVV 227          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 70/199 (35.18%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D  +AK+ + IR GKGK R R+Y +RK  L+V
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNRKSVLIV 198          
The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_CAEEL1.780e-5652.1560S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI9.506e-3448.7760S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METTH1.855e-2934.4750S ribosomal protein L4P OS=Methanobacterium ther... [more]
RL4_METKA2.679e-2836.1050S ribosomal protein L4P OS=Methanopyrus kandleri... [more]
RL4_METS34.569e-2832.3550S ribosomal protein L4P OS=Methanobrevibacter sm... [more]
RL4_METST1.125e-2632.0450S ribosomal protein L4P OS=Methanosphaera stadtm... [more]
RL4_METMJ4.277e-2634.6350S ribosomal protein L4P OS=Methanoculleus marisn... [more]
RL4_METMP1.625e-2536.8950S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_PYRAE3.621e-2537.4350S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]
RL4_METBU4.729e-2535.1850S ribosomal protein L4P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionC34106B10EF PostHarvP1 Citrus clementina cDNA clone C34106B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bp
CATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAA
AAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCC
AGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTG
CCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCA
CTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGG
CAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCC
CGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGACCAGGGAGC
CTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCT
GGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATC
GTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGG
TCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCG
CCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATC
GGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCC
TGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGC
TTGTTGTG
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