FC931537

Overview
NameFC931537
Unique NameFC931537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931537_ssr70 microsatellite FC931537_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:7..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 66/198 (33.33%), Postives = 96/198 (48.48%), Query Frame = 1
Query:  115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            D+       + LPDV     RPD++         N  QPY     AG +TSA  WG+GR  S +PR+       + + A     RGGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  ++ E ++KT   ++ L+ IG Y D  +AK  + IR G+GK+R R+Y  +K  L+V
Sbjct:    8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 70/204 (34.31%), Postives = 101/204 (49.51%), Query Frame = 1
Query:   97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V +L+G++  +    + LP+V     RPDI+      +  + RQPY  +  +G   S E+WG G   +R+PR   G      +        GGR   P K  R+W  KIN  + R              LV  R H  E   E+P VVS+  ESV++T    +V + IG YAD E+AK+ +  R G+GKMR RRY+ +K  L+V
Sbjct:    5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGR-----RAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLV 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 67/198 (33.84%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            D+   A   V LP V  A  RPD++         N  QPY     +G +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  ES+E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L+V
Sbjct:    8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLVN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 67/205 (32.68%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            T+ +L GD A     T+ LP V +   RPD++         N +QPY     AG +T AES+G+GR ++ +PR   G   R  Q         GR   P K  +   + +N  +++            PS V  RGH+ E   E+PLVVSD  E + KT   + VL+ +G +AD  ++ +++ IR G+GK R R+Y   K  L +
Sbjct:    4 TIHNLNGDKA----DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFI 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 66/206 (32.04%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            ++V  L+G+   +    + LP      +R D++  V  +    S QP      AG +TSA S+G    ++R+PRV G G     + A      GGR+  P    +R   ++N+ +K+            P+ V ARGH+  T   +P+++ D  E++ K    + +LK IG   D ++ K+S+G+R GKGKMR RRY   KGPL+V
Sbjct:   10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKGSG-----EAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIV 205          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 66/198 (33.33%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E++E+T   ++ L+  G Y D  +AK  + IR G+GK+R R+Y  +K  L+V
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 69/206 (33.50%), Postives = 99/206 (48.06%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V +LEG+   +    + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R            P LV ARGH ++ VP  PLVV D  + V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRYKKAKGPLIV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 64/189 (33.86%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + LP V     RPD++         +  QP      AG +   E+ G G +++R+ R+     +     AF    RGGR   P K+ +     IN  +KR              LV ARGH I+ VP++PL+V D  + V+KT    ++ K++G + D  +AK+  G+R GKGKMR RRY   KGPL+V
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 71/206 (34.47%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD EKAKD   I+ G+ K+R R+Y   +  LVV
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKYKKPRSVLVV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V+++EG +A D    + LP +     RPD++      +    RQP+     AG  +SA  WG+GR  S +PR+  G      + A     +GGR   P    +   ++IN  +K+              L+ +RGH+ E    +PL+  D  E++ KT   +  L  IG Y+D E++K+S+ +R G+GK+R RRY  RK  L+V
Sbjct:    5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQRKSLLIV 197          
The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_METBF1.376e-2433.3350S ribosomal protein L4P OS=Methanosarcina barker... [more]
RL4_ARCFU3.065e-2434.3150S ribosomal protein L4P OS=Archaeoglobus fulgidu... [more]
RL4_METAC5.228e-2433.8450S ribosomal protein L4P OS=Methanosarcina acetiv... [more]
RL4_HALWD5.228e-2432.6850S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_SULAC8.918e-2432.0450S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]
RL4_METMA1.165e-2333.3350S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_THEGJ3.389e-2333.5050S ribosomal protein L4P OS=Thermococcus gammatol... [more]
RL4_PYRFU4.426e-2333.8650S ribosomal protein L4P OS=Pyrococcus furiosus G... [more]
RL4_METM55.780e-2334.4750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METB65.780e-2331.3750S ribosomal protein L4P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionC34106B10EF PostHarvP1 Citrus clementina cDNA clone C34106B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bp
CATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAA
AAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCC
AGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTG
CCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCA
CTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGG
CAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCC
CGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGACCAGGGAGC
CTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCT
GGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATC
GTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGG
TCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCG
CCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATC
GGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCC
TGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGC
TTGTTGTG
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