FC931537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23 Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V ARGH I+ VP++PL+V D + V KT ++ K++G + D E+AK+ GIR GKGKMR RRY KGPL+V Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIV 200
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23 Identity = 67/206 (32.52%), Postives = 101/206 (49.03%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + V SL G+ + + LP V + RPD++ + QP AG + E+ G GR ++R+ R+ AF RGGR P K+ + IN +K+ LV ARGH I+ +P++PLVV + E V +T+ ++ K++G + D E+AK + +R GKGKMR RRY KGPL+V Sbjct: 3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGKMRGRRYKKAKGPLIV 200
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23 Identity = 68/206 (33.01%), Postives = 101/206 (49.03%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + V +LEG+ + + LP+V RPD++ + QP AG + E+ G G ++R+ R+ AF RGGR P K+ + IN ++R LV ARGH ++ VP++PLVV + E V KT+ ++ K++G + D E+AK + IR GKGKMR RRY KGPL+V Sbjct: 3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIV 200
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METHJ (50S ribosomal protein L4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23 Identity = 70/206 (33.98%), Postives = 105/206 (50.97%), Query Frame = 1 Query: 97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSR--QPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V +L G +A + + LP V + RPD++ + I++ SR QP+ AG SA WG+GR VS +PR+ + + A +GGR P K+ + R IN +KR P LV +RGH +P V+S ES++KT + L+ +G Y D E+A+ S+ +R G+GK+R RRY RK L+V Sbjct: 5 VLTLTGSVAHE----IELPPVFSSEFRPDLIK--KAVIAQQSRRYQPHGAYVYAGITASAVGWGSGRGVSHVPRLKN-----SSRAAKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIAATISPELVRSRGHVF--TGSLPYVLSGDFESLKKTKEVIAALRAVGVYGDVERAERSRKVRAGRGKLRGRRYKQRKSLLIV 197
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23 Identity = 71/205 (34.63%), Postives = 102/205 (49.76%), Query Frame = 1 Query: 94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 TV L+G DA S V LP + + + RPD++G S N +Q Y AG +T AES+G+GR ++ IPR R A GR P K + + +N +++ V RGH + ++PLVVSD E + KT AL VL+ +GA AD E+A++ + +R G+GK R R+Y K LVV Sbjct: 4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAVS-----GRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKYSQPKSVLVV 197
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22 Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V +RGH ++ VP++PL+V D + V KT ++ K++G + D E+AK+ G+R GKGKMR RRY KGPL+V Sbjct: 16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIV 200
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22 Identity = 71/206 (34.47%), Postives = 99/206 (48.06%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT L+V K + AD +AKD I+ G+ K+R R+Y K LVV Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKDGIKIKAGRAKLRGRKYKKPKSVLVV 198
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22 Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 1 Query: 148 LPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 L V + RPD++ + QP V AG +TSA+S G G +R+ R G GAF GGR P K+ + H ++N ++ +V RGH +ETVP +PL+VSD ES++KT L+ K +G D ++AKD IR G GK+R R+Y K LVV Sbjct: 18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVV 198
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22 Identity = 62/206 (30.10%), Postives = 100/206 (48.54%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + + S+ G+M + + LP+V +R DI+ IS + RQPY S AG + + G +SR+PR+ GG A G G+ + + + KIN +++ V RGH+ + ++P+VV D E + KT A+ +LK +G Y D E++++ + IR G+GKMR RRY K L+V Sbjct: 5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV 201
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22 Identity = 70/206 (33.98%), Postives = 98/206 (47.57%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ P +V ARGHKIE VP +PLVV+ ES+ KT L V + AD E+AKD I+ G+ K+R R+Y K LVV Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKIKAGRAKLRGRKYKKPKSVLVV 198 The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bpback to top |