FC931537

Overview
NameFC931537
Unique NameFC931537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931537_ssr70 microsatellite FC931537_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:7..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V ARGH I+ VP++PL+V D  + V KT    ++ K++G + D E+AK+  GIR GKGKMR RRY   KGPL+V
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 67/206 (32.52%), Postives = 101/206 (49.03%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V SL G+   +    + LP V +   RPD++         +  QP      AG +   E+ G GR ++R+ R+           AF    RGGR   P K+ +     IN  +K+              LV ARGH I+ +P++PLVV +  E V +T+   ++ K++G + D E+AK +  +R GKGKMR RRY   KGPL+V
Sbjct:    3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGKMRGRRYKKAKGPLIV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 68/206 (33.01%), Postives = 101/206 (49.03%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V +LEG+   +    + LP+V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R              LV ARGH ++ VP++PLVV +  E V KT+   ++ K++G + D E+AK +  IR GKGKMR RRY   KGPL+V
Sbjct:    3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METHJ (50S ribosomal protein L4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 70/206 (33.98%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   97 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSR--QPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V +L G +A +    + LP V  +  RPD++    + I++ SR  QP+     AG   SA  WG+GR VS +PR+       + + A     +GGR   P K+ +   R IN  +KR            P LV +RGH       +P V+S   ES++KT   +  L+ +G Y D E+A+ S+ +R G+GK+R RRY  RK  L+V
Sbjct:    5 VLTLTGSVAHE----IELPPVFSSEFRPDLIK--KAVIAQQSRRYQPHGAYVYAGITASAVGWGSGRGVSHVPRLKN-----SSRAAKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIAATISPELVRSRGHVF--TGSLPYVLSGDFESLKKTKEVIAALRAVGVYGDVERAERSRKVRAGRGKLRGRRYKQRKSLLIV 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 71/205 (34.63%), Postives = 102/205 (49.76%), Query Frame = 1
Query:   94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            TV  L+G    DA S V LP + + + RPD++G   S    N +Q Y     AG +T AES+G+GR ++ IPR       R    A       GR   P K  +   + +N  +++               V  RGH  +   ++PLVVSD  E + KT  AL VL+ +GA AD E+A++ + +R G+GK R R+Y   K  LVV
Sbjct:    4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAVS-----GRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKYSQPKSVLVV 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V +RGH ++ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G+R GKGKMR RRY   KGPL+V
Sbjct:   16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRYKKAKGPLIV 200          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 71/206 (34.47%), Postives = 99/206 (48.06%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD  +AKD   I+ G+ K+R R+Y   K  LVV
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKDGIKIKAGRAKLRGRKYKKPKSVLVV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  148 LPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            L  V +   RPD++     +      QP  V   AG +TSA+S G G   +R+ R   G       GAF     GGR   P K+ +  H ++N  ++               +V  RGH +ETVP +PL+VSD  ES++KT   L+  K +G   D ++AKD   IR G GK+R R+Y   K  LVV
Sbjct:   18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVV 198          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 62/206 (30.10%), Postives = 100/206 (48.54%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + + S+ G+M  +    + LP+V    +R DI+      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  +  + KIN  +++               V  RGH+ +   ++P+VV D  E + KT  A+ +LK +G Y D E++++ + IR G+GKMR RRY   K  L+V
Sbjct:    5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV 201          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 70/206 (33.98%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++             P +V ARGHKIE VP +PLVV+   ES+ KT   L V   +   AD E+AKD   I+ G+ K+R R+Y   K  LVV
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKIKAGRAKLRGRKYKKPKSVLVV 198          
The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PYRAB7.549e-2333.8650S ribosomal protein L4P OS=Pyrococcus abyssi GN=... [more]
RL4_THESM9.860e-2332.5250S ribosomal protein L4P OS=Thermococcus sibiricu... [more]
RL4_THEON9.860e-2333.0150S ribosomal protein L4P OS=Thermococcus onnurine... [more]
RL4_METHJ9.860e-2333.9850S ribosomal protein L4P OS=Methanospirillum hung... [more]
RL4_HALLT9.860e-2334.6350S ribosomal protein L4P OS=Halorubrum lacusprofu... [more]
RL4_PYRHO1.682e-2232.2850S ribosomal protein L4P OS=Pyrococcus horikoshii... [more]
RL4_METM71.682e-2234.4750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_META32.869e-2234.7650S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_THEAC6.391e-2230.1050S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_METM66.391e-2233.9850S ribosomal protein L4P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC34106B10EF PostHarvP1 Citrus clementina cDNA clone C34106B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bp
CATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAA
AAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCC
AGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTG
CCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCA
CTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGG
CAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCC
CGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGACCAGGGAGC
CTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCT
GGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATC
GTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGG
TCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCG
CCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATC
GGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCC
TGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGC
TTGTTGTG
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