FC931537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22 Identity = 63/189 (33.33%), Postives = 94/189 (49.74%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R D++ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ + NV +KR + V ARGH + P+VV+D +++ TS + LK+IG Y D E+ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLII 206
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.090e-21 Identity = 66/206 (32.04%), Postives = 100/206 (48.54%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + V +LEG+ + + LP V RPD++ + QP +AG + E+ G G ++R+ R+ AF GGR P K+ + IN ++R LV ARGH ++ V ++PLVV+D + V KT+ ++ K++G + D E+AK + IR GKGKMR RRY KGPL+V Sbjct: 3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIV 200
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRY 681 +TV+ L+GD A T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ G QGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT + +L+ +G +AD E+A + + +R G+G +R R+Y Sbjct: 3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY 188
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRY 681 +TV+ L+GD A T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ G QGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT + +L+ +G +AD E+A + + +R G+G +R R+Y Sbjct: 3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY 188
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21 Identity = 68/206 (33.01%), Postives = 97/206 (47.09%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + V +L+G + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ +V ARGHKIE VP +PLVV+ ES+ KT L V K + AD E+AKD I+ G+ K+R R+Y + LVV Sbjct: 3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKYKKPRSVLVV 198
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21 Identity = 65/198 (32.83%), Postives = 92/198 (46.46%), Query Frame = 1 Query: 115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 D++ + + LP + RPD++ N QPY AG TSA SWG G VSR+PR+ G + A M RGGR P + KIN ++ P +V ARGH E+P+VV ES+ KTS + L G + D +AK+ + +R GKGK+R RR+ + L+V Sbjct: 7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTGR-----RAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFSG--ELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRFRQPRSILIV 197
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20 Identity = 60/206 (29.13%), Postives = 99/206 (48.06%), Query Frame = 1 Query: 91 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + + S+ G+ + + LP++ S+R D++ IS + RQPY S AG + + G +SR+PR+ GG A G G+ + ++ + IN +++ V RGH+ +P+VV D+ ++KT A+ +LK IG Y D ++K+ + IR G+GKMRNRRY K L+V Sbjct: 5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIV 201
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20 Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLII 206
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20 Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLII 206
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIM (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19 Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLII 206 The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bpback to top |