FC931537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19 Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLII 206
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19 Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLII 206
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19 Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 1 Query: 94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 TV+ L+GD A + V LP V + RPD++ N Q AG +T AES G+GR ++ +PR G Q GR P K + IN +++ V RGH+ + ++PLVVSD E + KT A+ VL+ +G Y D E+A+D + +R G+G R R+Y K LVV Sbjct: 4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVV 197
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIL (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19 Identity = 60/189 (31.75%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV G + A GGR+ P + ++ + N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ IR GKGKMR R+Y GPL++ Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLII 206
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18 Identity = 59/198 (29.80%), Postives = 94/198 (47.47%), Query Frame = 1 Query: 115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 D+ + + LP +R D++ V + + QP AG +TSA S+G ++R+PRV G + A GGR+ P + ++ ++N +K+ + V RGH + ++ +P++V D + KT ++VL+ + Y D E+ KD IR GKGKMR RRY KGPL V Sbjct: 14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVKTTG-----EAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFV 205
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18 Identity = 61/194 (31.44%), Postives = 90/194 (46.39%), Query Frame = 1 Query: 127 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 +A + LP V + RPD++ + QP AG +TSA++ G G +R+ RVP G R Q GGR P K+ + ++N ++ P LV RGH ET +P++V S E ++KT V +++G D +AK+ IR GKGKMR R+Y + LVV Sbjct: 11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVV 197
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17 Identity = 60/191 (31.41%), Postives = 89/191 (46.60%), Query Frame = 1 Query: 139 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 +V LP + + +R D++ + QP AG +TSA S G GR V+R+PR+ G + + A NM RGGR P ++ + IN +KR LV RGH+ + +P+V+ S + A +L+ +G Y D +AK+ + GKGKMR RRY K L V Sbjct: 28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFV 212
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15 Identity = 67/203 (33.00%), Postives = 92/203 (45.32%), Query Frame = 1 Query: 142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRADQGAFGNMCRG------GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708 + LP IR D++ I + RQPY S AG Q SA SW T GR +SR+ R R F + R G+ P K + W+ KIN ++R LV ARGH I+ +P+VV D E + KT ++L ++G + E+ + + R GKGK R R YI RKGPL+V Sbjct: 16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRA----ILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIV 210
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4) HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15 Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 1 Query: 94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRY 681 T+ L+G+ TD V LPDV + +R D++G N +Q Y AG +T AES+G+GR + +P+ G R Q GR P K + +N +++ LV RGH+ + E+P+VVSD E + KT + +L+ + +AD ++A D I+ G+G R R+Y Sbjct: 4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKY 186 The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bpback to top |