FC931537

Overview
NameFC931537
Unique NameFC931537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931537_ssr70 microsatellite FC931537_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:7..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIK (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV   G     + A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLII 206          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIA (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV   G     + A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKEPIGPLII 206          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 1
Query:   94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            TV+ L+GD A +    V LP V +   RPD++         N  Q       AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D + +R G+G  R R+Y   K  LVV
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVV 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULIL (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 60/189 (31.75%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV   G     + A      GGR+  P  + ++   + N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+   IR GKGKMR R+Y    GPL++
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKNSG-----EAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKYKESIGPLII 206          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 59/198 (29.80%), Postives = 94/198 (47.47%), Query Frame = 1
Query:  115 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            D+  +    + LP      +R D++  V  +    + QP      AG +TSA S+G    ++R+PRV   G     + A      GGR+  P  + ++   ++N  +K+             + V  RGH + ++  +P++V D    + KT   ++VL+ +  Y D E+ KD   IR GKGKMR RRY   KGPL V
Sbjct:   14 DLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVKTTG-----EAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFV 205          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 61/194 (31.44%), Postives = 90/194 (46.39%), Query Frame = 1
Query:  127 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            +A   + LP V +   RPD++     +      QP      AG +TSA++ G G   +R+ RVP G   R  Q        GGR   P K+ +    ++N  ++             P LV  RGH  ET   +P++V  S E ++KT     V +++G   D  +AK+   IR GKGKMR R+Y   +  LVV
Sbjct:   11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVV 197          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 60/191 (31.41%), Postives = 89/191 (46.60%), Query Frame = 1
Query:  139 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A  NM RGGR   P ++ +     IN  +KR              LV  RGH+  +   +P+V+  S    +     A  +L+ +G Y D  +AK+ +    GKGKMR RRY   K  L V
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFV 212          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 67/203 (33.00%), Postives = 92/203 (45.32%), Query Frame = 1
Query:  142 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSA------ESWGT--GRAVSRIPRVPGGGTHRADQGAFGNMCRG------GRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            + LP      IR D++      I  + RQPY  S  AG Q SA       SW T  GR +SR+ R       R     F  + R       G+   P K  + W+ KIN  ++R              LV ARGH I+    +P+VV D  E + KT    ++L ++G   + E+  + +  R GKGK R R YI RKGPL+V
Sbjct:   16 IELPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRA----ILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIV 210          
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 1
Query:   94 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRY 681
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y     AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD ++A D   I+ G+G  R R+Y
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKY 186          
The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_SULIK1.020e-1931.7550S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULIA1.020e-1931.7550S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_NATPD1.020e-1932.2050S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_SULIL2.273e-1931.7550S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULTO1.128e-1829.8050S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_METJA2.513e-1831.4450S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_AERPE1.247e-1731.4150S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]
RL4_NANEQ1.991e-1533.0050S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALMA1.991e-1530.1050S ribosomal protein L4P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionC34106B10EF PostHarvP1 Citrus clementina cDNA clone C34106B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bp
CATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAA
AAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCC
AGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTG
CCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCA
CTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGG
CAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCC
CGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGACCAGGGAGC
CTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCT
GGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATC
GTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGG
TCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCG
CCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATC
GGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCC
TGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGC
TTGTTGTG
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