FC931538

Overview
NameFC931538
Unique NameFC931538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.390e-49
Identity = 104/195 (53.33%), Postives = 124/195 (63.59%), Query Frame = 1
Query:   91 RKAIGLGKSVGLGLRGL---QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            R   G G+ +   L  L   Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    4 RAVCGTGRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 194          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 98/172 (56.98%), Postives = 116/172 (67.44%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 170          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 98/172 (56.98%), Postives = 116/172 (67.44%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 170          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.277e-48
Identity = 92/172 (53.49%), Postives = 120/172 (69.77%), Query Frame = 1
Query:  154 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYK 666
            LP LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGG H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYK
Sbjct:    8 LPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYK 177          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 98/175 (56.00%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  142 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 194          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 98/175 (56.00%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  142 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 194          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.846e-48
Identity = 97/172 (56.40%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 170          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.846e-48
Identity = 97/172 (56.40%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 170          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 96/172 (55.81%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 170          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 96/172 (55.81%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYK
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYK 170          
The following BLAST results are available for this feature:
BLAST of FC931538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_MACNE4.390e-4953.33Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACMU9.781e-4956.98Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU9.781e-4956.98Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_CHLTR1.277e-4853.49Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_PONPY2.179e-4856.00Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]
SODM_HUMAN2.179e-4856.00Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM_PANTR2.846e-4856.40Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA2.846e-4856.40Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_CEBAP4.854e-4855.81Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]
SODM_CALJA4.854e-4855.81Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]

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Properties
Property NameValue
Genbank descriptionC34106B11EF PostHarvP1 Citrus clementina cDNA clone C34106B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931538 ID=FC931538; Name=FC931538; organism=Citrus clementina; type=EST; length=684bp
GGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAACGT
CACCGTTTCATTCGCGATGGCTCTCCGTTCGCTTGCCATCAGAAAAGCTA
TAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGGACTGCAGACGGTC
ACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAG
CGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTA
CTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTC
GATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGG
AGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACG
AAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACG
CATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGC
AGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTA
AAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAA
GCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATA
CTACCTACAGTACAAGATGTCAACCAGATTATCT
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