FC931538

Overview
NameFC931538
Unique NameFC931538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.670e-38
Identity = 84/172 (48.84%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            TLPDL YDYSALEP ISG+I +LHH KHH AYV   N A+E+L  A    D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT  ++L+     +Q   V     ++PLL +D+WEHA+YLQYK
Sbjct:    5 TLPDLDYDYSALEPHISGQINELHHSKHHAAYVAGANTALEKLEAAREAGDHSAIFLHEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_EPTST (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Eptatretus stoutii PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 83/147 (56.46%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  196 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 636
            IS EIMQLHH KHH AYV N N   E+L +AL K D +T V LQ A +FNGGGH+NHSIFW+NL+P   GGG+P    L  AI+  FGS++ L +K+ A    +QGSGW WLG + E KRL + T ANQDPL      L PLLGIDV
Sbjct:    2 ISAEIMQLHHSKHHAAYVNNVNVVEEKLAEALGKGDVNTQVSLQPAFRFNGGGHINHSIFWRNLSP--SGGGQPCGDLLK-AIENDFGSVDKLREKLVAAAVGVQGSGWAWLGFNKESKRLQIATCANQDPL-QGTTGLFPLLGIDV 144          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_PETMA (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Petromyzon marinus PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 84/148 (56.76%), Postives = 98/148 (66.22%), Query Frame = 1
Query:  196 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 636
            IS  IMQLHH KHH  YV N N A ++L +A+ K D +  + LQ AIKFNGGGH+NHSIFW NL+P    GG  P   L  AI+T FGS   L +KMSA   A+QGSGW WLG D E  RL +   ANQDPL  +A T L+PLLGIDV
Sbjct:    2 ISANIMQLHHSKHHATYVNNLNVAEQKLAEAVAKGDVTAEIALQPAIKFNGGGHINHSIFWTNLSP---NGGGAPTGDLQKAIETDFGSFTKLQEKMSAVSVAVQGSGWGWLGYDKETGRLRIAACANQDPL--QATTGLIPLLGIDV 144          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCLE (Superoxide dismutase [Mn] OS=Mycobacterium leprae GN=sodA PE=3 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 82/172 (47.67%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            TLPDL +DY+ALEP ISGEI ++HH KHH AYV   N A+ +L +A  K D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L   ID  FGS +    + SA    LQGSGW  LG DT   +L+     +Q   V+    ++PLL +D+WEHA+YLQYK
Sbjct:    5 TLPDLDWDYAALEPHISGEINEIHHTKHHAAYVKGVNDALAKLDEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGGLATDIDETFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGNKLLTFQLYDQQANVSLG--IIPLLQVDMWEHAFYLQYK 171          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.855e-37
Identity = 82/172 (47.67%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            TLPDL YDY ALEP ISG+I +LHH KHH AYV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYK
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHAAYVKGVNDAVAKLDEARANGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.588e-37
Identity = 87/175 (49.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  145 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            T  LP+L Y Y ALEP I+ EIM+LHH KHH  YV   N A+E+L +A    +   VV  L   + FN GGH NHSIFWKNL+P   GGGEP   +L  AI   FGS E      SA    LQGSGW  LG D    RLV+E   +Q   +  +  L PLL +D+WEHA+YLQYK
Sbjct:    2 TYALPELDYAYDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVVTALSKDLAFNLGGHTNHSIFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNI--SANLTPLLMLDMWEHAFYLQYK 171          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 83/179 (46.37%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  154 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKD-PFGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQ 178          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 83/179 (46.37%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  154 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKD-PFGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQ 178          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCSM (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 79/172 (45.93%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYK
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171          
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCS2 (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 79/172 (45.93%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYK
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171          
The following BLAST results are available for this feature:
BLAST of FC931538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_NOCAS2.670e-3848.84Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]
SODM_EPTST4.554e-3856.46Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_PETMA2.952e-3756.76Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_MYCLE2.952e-3747.67Superoxide dismutase [Mn] OS=Mycobacterium leprae ... [more]
SODM_MYCFO3.855e-3747.67Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_CORDI8.588e-3749.71Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM_THET82.499e-3646.37Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET22.499e-3646.37Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_MYCSM2.499e-3645.93Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCS22.499e-3645.93Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106B11EF PostHarvP1 Citrus clementina cDNA clone C34106B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931538 ID=FC931538; Name=FC931538; organism=Citrus clementina; type=EST; length=684bp
GGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAACGT
CACCGTTTCATTCGCGATGGCTCTCCGTTCGCTTGCCATCAGAAAAGCTA
TAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGGACTGCAGACGGTC
ACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAG
CGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTA
CTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTC
GATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGG
AGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACG
AAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACG
CATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGC
AGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTA
AAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCGCTGGTGACTAAA
GCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATA
CTACCTACAGTACAAGATGTCAACCAGATTATCT
back to top