FC931538
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36 Identity = 80/172 (46.51%), Postives = 105/172 (61.05%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 TLPDL +DY+ALEP ISG+I ++HH KHH YV N A+ +L +A D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+YLQYK Sbjct: 5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTVGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3) HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36 Identity = 80/172 (46.51%), Postives = 105/172 (61.05%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 TLPDL +DY+ALEP ISG+I ++HH KHH YV N A+ +L +A D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+YLQYK Sbjct: 5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36 Identity = 79/172 (45.93%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 TLPDL +DY ALEP ISG+I ++HH KHH YV N A+ +L +A D + + + + F+ GGHVNHS++WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+YLQYK Sbjct: 5 TLPDLDWDYEALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSLWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36 Identity = 82/178 (46.07%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 154 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 LP+L Y Y ALEP I M++HHQKHH AYVTN N A+E+ + L + T+ +Q A++ NGGGH+NHS+FW+ L P GG + P L AID FG AL +K++ GSGW WL D F +L V +TANQD V P++GIDVWEHAYYL+Y+ Sbjct: 7 LPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLVKD-PFGKLHVISTANQDNPVMGG--FAPIVGIDVWEHAYYLKYQ 178
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36 Identity = 81/178 (45.51%), Postives = 108/178 (60.67%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 TLP L Y Y+ALEP I + M++HH KHHQ Y+ N N A+E + +AL + S L+G ++ NGGGH NHS+FWK L P GGGE P +L AI + G L+ + + GSGW WL + E K+LVVE+T NQD ++ T P+LG+DVWEHAYYL+Y+ Sbjct: 3 TLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFANEPVEALLQKLDSLPENLRGPVRNNGGGHANHSLFWKVLTP--NGGGE-PKGALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTPE-KKLVVESTGNQDSPLSTGNT--PILGLDVWEHAYYLKYQ 174
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.240e-35 Identity = 81/178 (45.51%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 TLP LPY Y ALEP I + M++HH KHHQ Y+ N N A+E A V+ S LQG ++ NGGGH NHS+FW ++P GGGE P + AID G E + + + GSGW WL + T K++VVE+TANQD + + T P+LG+DVWEHAYYL+Y+ Sbjct: 4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYYLKYQ 175
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.240e-35 Identity = 81/178 (45.51%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 TLP LPY Y ALEP I + M++HH KHHQ Y+ N N A+E A V+ S LQG ++ NGGGH NHS+FW ++P GGGE P + AID G E + + + GSGW WL + T K++VVE+TANQD + + T P+LG+DVWEHAYYL+Y+ Sbjct: 4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYYLKYQ 175
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.763e-35 Identity = 82/182 (45.05%), Postives = 110/182 (60.44%), Query Frame = 1 Query: 154 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 666 L LPYDY+ALEP I + M+LHH KHH YV N N ++V+ L Q LN+V + ++ I+ NGGGHVNH++FW+ +AP + GG P ++ AID FGS +A Q+ + GA GSGW WL D + K L + +TANQD + P P+LG DVWEHAYYL+Y+ Sbjct: 46 LDPLPYDYAALEPYIDAQTMRLHHDKHHATYVNNINETLKAYPDLQKQSVDSLIQNLNQVPEA----IRTKIRNNGGGHVNHTMFWQIMAP--KAGGTPT-GAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLVSDRQGK-LSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQ 219
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 6.155e-35 Identity = 80/173 (46.24%), Postives = 104/173 (60.12%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYK 666 TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S ++ + + FN GHVNH+I+WKNL+P GG+ P L AI FGS + + A +QGSGW LG DT +L++ + T P +VPLL +D+WEHA+YLQYK Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYK 171
BLAST of FC931538 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 6.155e-35 Identity = 80/173 (46.24%), Postives = 104/173 (60.12%), Query Frame = 1 Query: 151 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYK 666 TLPDL +DY ALEP ISG+I +LHH KHH YV N AV +L +A K D S ++ + + FN GHVNH+I+WKNL+P GG+ P L AI FGS + + A +QGSGW LG DT +L++ + T P +VPLL +D+WEHA+YLQYK Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYK 171 The following BLAST results are available for this feature:
BLAST of FC931538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 225
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931538 ID=FC931538; Name=FC931538; organism=Citrus clementina; type=EST; length=684bpback to top |