FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 81/212 (38.21%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEV--VESGGKNIEVAVMT 687
            RYD   T+FSP+G L+QVEYA+EA+      +G+  ++ IV+  E+K+  KL  DS    K+  L ++I+   AG+ ADA +LIN  R    S+R +  + + VE + + +   +Q+YTQ GG RPFG+S L +G+D + G   LYQ+DPSG ++ WKA   G N  +    L++ YK  + +E  +LAI+ L +   V+   + +E+AV+T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGY-QLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLT 214          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 90/214 (42.06%), Postives = 131/214 (61.21%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQS--HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVMT 687
            +Y  ++T FSP+G L Q+EYAL AV  G  +VG++ TD +VL  EKK T +L    S+ K+ ++   I +  +G+  D RVL++++R   Q+   ++  E P T + + + IA + Q+ TQSGGVRPFG+S L+ G D     PSLYQ DPSGT+ AWKA A G++S + + FLEK Y  E    + +  AI AL E  E      NIE+AV++
Sbjct:    4 KYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPT-KILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKG--PSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELTEDNIEIAVVS 214          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 83/212 (39.15%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVM 684
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++  + +V+  EKK    L D  SV+KI SL  +I +  +G+  D RVL+ ++R + Q +    ++ + V  + R  A + Q++TQSGGVRPFG+S LI G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y E     + I  AI  L E  E      NIE+ ++
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYD--DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGII 213          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 83/212 (39.15%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVM 684
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++  + +V+  EKK    L D  SV+KI SL  +I +  +G+  D RVL+ ++R + Q +    ++ + V  + R  A + Q++TQSGGVRPFG+S LI G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y E     + I  AI  L E  E      NIE+ ++
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYD--DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGII 213          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 84/212 (39.62%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRAR-IECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            RY  ++T FSP G L Q+EYAL AV +G  A+G++ T+ IVL  EKKS+  L D  S+ KI  +  +I +  +G+  D RVL++RAR +    ++    +      + + +A + Q+ TQSGGVRP+G+S LI G+D   G P LYQ DPSG++  WKA A G+N+ + + FLEK Y E    ++ + +A+  L E +E    G  IE+ ++
Sbjct:    4 RYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWD--EGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEGEMNGDTIEIGIV 213          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 82/209 (39.23%), Postives = 127/209 (60.77%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEV 675
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++ ++ +V+  EKK    L D  SV+KI  L  +I +  +G+  D RVL+ ++R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y E     + I  AI  L E  E     KNIE+
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKG--PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEI 210          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 89/219 (40.64%), Postives = 132/219 (60.27%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVESG--GKNIEVAVMT 687
            + YDR +  FSP+G LFQVEYALEA++ G   +GV+  + +VL VEK+ T  L +  S++K+V +D H+  A +GL ADAR +I+ ARIE Q+HR    +P+ VE   + I  L  ++ ++         RPFG++ LI G D     PSLY +DPSGTF+ + A A G  S   +  L++ Y +T +  E  KLA+  L +V+E      N+E+AV+T
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYALEAIKLG---IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKG--PSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEEAITTTNVELAVIT 219          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 82/209 (39.23%), Postives = 126/209 (60.29%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEV 675
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++ ++ +V+  EKK    L D  SV+KI  L  +I    +G+  D RVL+ ++R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y E     + I  AI  L E  E     KNIE+
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKG--PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEI 210          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 1
Query:   67 DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALLEVVES--GGKNIEVAVMT 687
            D  +  FS +G LFQVEYA EA++ G+  +G++  + +VL VEK+ +  L    S+ KI+ +D+HI  A +GL ADAR LI+ AR+E Q+HR   ++P+ VE + + I+ L  ++ +         RPFG++ LI G D  TG P L+QTDPSG F  + A ATG  + + +  L + Y K  + +E   LA+  L +V+E     KN+EVA++T
Sbjct:    9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDE-TG-PRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEEKLNSKNVEVALVT 221          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 84/213 (39.44%), Postives = 126/213 (59.15%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESGG---KNIEVAVMT 687
            YD   T+FSP+G L+QVEYALEA+     A+G+   D IVL  EKK T KL +   S  K+  + +++  A AGL ADA +LIN AR   Q +  T  + +  E + R +  L+Q YTQ GG+RPFG+S L  G+D   G   L+Q++PSG + +W+AN+ G NS S++  + + YK+     E   +A++ L + ++S     + IE A +T
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGY-QLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATIT 216          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA4_CAEEL1.930e-3638.21Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA2_SCHPO1.930e-3642.06Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA2_ORYSJ1.930e-3639.15Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI1.930e-3639.15Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_NEUCR2.521e-3639.62Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA2A_ARATH3.292e-3639.23Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA5_DICDI5.615e-3640.64Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA2B_ARATH5.615e-3639.23Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA5_ENTHI7.334e-3639.53Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA4_SCHPO7.334e-3639.44Probable proteasome subunit alpha type-4 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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