FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 82/217 (37.79%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMT 687
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D ++L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++YKE  G+ T+K    LAI+ L   ++V +   + +E+A +T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLT 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 82/217 (37.79%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMT 687
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D ++L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++YKE  G+ T+K    LAI+ L   ++V +   + +E+A +T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLT 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 87/213 (40.85%), Postives = 129/213 (60.56%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEVVESGGK------NIEVAVM 684
            Y  ++T FSP G L Q+E+AL+A   G +A+G++  + +VL  EKK    L D  SV+KI  +  +I L  AG+  D+RVLI +AR E + +    ++ + V  + R +A + Q++TQSGGVRPFG+S L+ GFD     P LYQ DPSG++ AWKA A G+N  S + FLEK Y   S    I+ AI+  L  ++ G +      N+E+A++
Sbjct:    5 YSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLH-SLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKG--PHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRY---SDDLEIEDAIQTALITIKEGFETQLTEFNMELAII 211          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 81/217 (37.33%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMT 687
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D ++L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++YKE  G+ T+K    LA++ L   ++V +   + +E+A +T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLT 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 81/217 (37.33%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMT 687
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D ++L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++YKE  G+ T+K    LA++ L   ++V +   + +E+A +T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLT 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 81/217 (37.33%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMT 687
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D ++L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DP+G +  WKA   G NS +    L+++YKE  G+ T+K    LAI+ L   ++V +   + +E+A +T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLT 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.108e-35
Identity = 83/220 (37.73%), Postives = 126/220 (57.27%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVMT 687
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G+   + +VL VEK+ T  L    +V KIV +D HI  A +GL ADAR LI RAR+ECQ+H     + +++E   + ++ L  ++  SG         RPFG++ L  G +   G P L+  DPSGTF    A A G  S   ++ L+  ++ + +  E I +++  L +V+E      N+EV  MT
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIE--AGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEEKLNSTNVEVMTMT 223          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.108e-35
Identity = 87/211 (41.23%), Postives = 119/211 (56.40%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRAR-IECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET----SGQETIKLAIRALLEVVESGGKNIEVAV 681
            Y  ++T FSP G L Q+EYAL AV+ G  +VG+R  D +VL  E   +V   D   V +I     HI    +G+  D R+L+ +AR I  +   +  E+  T++ +T  IA + Q+YTQSGGVRPFG S LI G+D   G P L+Q DPSG + AWKA A G+N  + + FLEK + E      G  T  L +R   + V     N+EVAV
Sbjct:    5 YGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVGSVLTDDQPKVEQI---SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTD-IAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVAV 210          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 83/217 (38.25%), Postives = 129/217 (59.45%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL ADA+ LI++AR+E Q+H  T  + +TVE +T+ ++ L  ++ +         RPFG++ L  G D     P L+  DPSGTF    A A G  S   +  L++ Y K  + +E IK ++  L +V+E      NIE+A +
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG--PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATV 220          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 83/217 (38.25%), Postives = 129/217 (59.45%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL ADA+ LI++AR+E Q+H  T  + +TVE +T+ ++ L  ++ +         RPFG++ L  G D     P L+  DPSGTF    A A G  S   +  L++ Y K  + +E IK ++  L +V+E      NIE+A +
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG--PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATV 220          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA4_HUMAN9.578e-3637.79Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN9.578e-3637.79Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA2_DICDI9.578e-3640.85Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA4_RAT1.251e-3537.33Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE1.251e-3537.33Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA4_MACFA2.134e-3537.33Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA5_DROME8.108e-3537.73Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA2_CAEEL8.108e-3541.23Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA5_MOUSE1.806e-3438.25Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN1.806e-3438.25Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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