FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 83/217 (38.25%), Postives = 129/217 (59.45%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL ADA+ LI++AR+E Q+H  T  + +TVE +T+ ++ L  ++ +         RPFG++ L  G D     P L+  DPSGTF    A A G  S   +  L++ Y K  + +E IK ++  L +V+E      NIE+A +
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG--PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATV 220          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 83/217 (38.25%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            + YDR +  FSP+G LFQVEYA+E  + G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL ADA+ LI++AR+E Q+H  T  + +TVE +T+ ++ L  ++ +         RPFG++ L  G D     P L+  DPSGTF    A A G  S   +  L++ Y K T+ +E IK ++  L +V+E      NIE+A +
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG--PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEEKLNATNIELATV 220          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 85/210 (40.48%), Postives = 122/210 (58.10%), Query Frame = 1
Query:   52 DMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALL---EVVESGGKNI 669
            D   YDR  ++FSPDG ++QVEYA EAV++G   +GVR  D +VL   + +  +L ++ S+ K+  LD+ +  A AG  ADAR L++ AR   Q   L   +P+ VE +T+ I    Q+ TQSGG RP+G S LI G +   G   L+ TDPSGT   WKA A G +   ++  LE  Y E  S ++ + LA+ AL+   E +ES   N+
Sbjct:    5 DKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVE--NGSGRLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEALVAADEEIESDELNL 212          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 83/212 (39.15%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG---QETIKLAIRALLEVVESGGKNIEVAV 681
            A YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  +I L   G+ ADAR L+ +AR +    R T    + V+ + ++IA   Q YTQ   +RP G+  +++G D   G P LY+ DP+G F   KA + G        FLEK  KE       ET++ AI AL  V++   K  E+ V
Sbjct:    7 AGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENG-PLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEV 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 81/212 (38.21%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRAR-IECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            RY  ++T FSP G L Q++YAL AV++G  ++G++ T+ +V+  EKKS+  L  S ++ K+  L   I    +G+  D RVL++++R +   S++    +    + +   +A + Q+ TQSGGVRPFG+S LI G D + G  SLYQ DPSG++  WKA A G+ S + + FLEK +  E   ++ I +A+  L E VE    G  IE+A++
Sbjct:    4 RYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGF-SLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAII 214          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 79/216 (36.57%), Postives = 129/216 (59.72%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKY----TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES--GGKNIEVAVM 684
            + YDR +  FSP+G LFQVEYA+EAV+ G+ ++G++ ++ ++L  EK+ST KL  + ++ KI  +D HI +  AGL AD+R L+ RA+IE Q+   T    + VE +T+ +A L  ++     ++   RPFG++ L  G D       L+  DPSGTF   KA + G  S+   + L++ Y +  + +E +K+A+  L +V+E      N+EV V+
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGA--KLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEEKLNSANVEVVVI 219          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.589e-33
Identity = 77/205 (37.56%), Postives = 120/205 (58.54%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNS-NSMREFLEKNYKETSGQETIKLAIRALLEVVE 651
            + YDR ++ FSP+G LFQVEY+LEA++ G+ A+G+   + +VLGVEK++T  L +S S+ KIV +D HI  A +GL ADAR +I  AR    +H L  ++ + VE +T+ +  L  ++ +          RPFG++ LI G D   G   L+  +PSGTF  + A A G  S  +  E L + +   + +E   L ++ L +V+E
Sbjct:    6 SEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGY-QLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVME 209          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 81/210 (38.57%), Postives = 118/210 (56.19%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET---SGQETIKLAIRALLEVVESGGKNIEVAV 681
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ ++++IA   Q YTQ   +RP G+  +I+G D   G P L++ DP+G F   KA + G        FLEK  K     S +ET++ AI AL  V++   K  E+ V
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKG-PQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEIEV 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 80/210 (38.10%), Postives = 117/210 (55.71%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG---QETIKLAIRALLEVVESGGKNIEVAV 681
            Y+R IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+I +   KK   KL D+ SV  +  +  ++ L   G+ ADAR L+ +AR E    R T    + V+ + ++IA   Q YTQ   +RP G+  +++G D   G P LY+ DP+G +   KA + G        FLEK  K       +ET++ AI AL  V++   K  E+ V
Sbjct:    9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYG-PQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEV 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG---QETIKLAIRALLEVVESGGKNIEVAV 681
            A YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  ++ L   G+ AD+R L+ +AR E    R      +  + + ++IA   Q YTQ   +RP G+  +++G D   G P LY+ DP+G F   KA + G        FLEK  KE       ET++ AI AL  V++   K  E+ V
Sbjct:    7 AGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERG-PLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQEDFKATEIEV 217          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA5_BOVIN1.806e-3438.25Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA5_RAT5.256e-3438.25Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSMA2_HALVO1.529e-3340.48Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA6A_ARATH1.529e-3339.15Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA2_YEAST3.407e-3338.21Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA5_CAEEL5.811e-3336.57Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA5_YEAST7.589e-3337.56Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA6_TOBAC1.691e-3238.57Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_SOYBN3.766e-3238.10Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6B_ARATH6.425e-3237.74Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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