FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 76/214 (35.51%), Postives = 119/214 (55.61%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEV--VESGGKNIEVAVMT 687
            A +DR IT+FSP+G L+QVEYA +A+ + N   V ++  D  V+  +KK T K     +V  +  +   I  A  G  AD+R  + +AR E  + R      + V+ + R IA + Q YTQ+  +RP G S +++ +D   G PS+Y+TDP+G FS +KA + G  +     +LEK YK   S ++ I+LAI  L  V  ++     IE+ V++
Sbjct:    7 AGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIG-PSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVLAIDFKPNGIEIGVVS 219          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 75/210 (35.71%), Postives = 117/210 (55.71%), Query Frame = 1
Query:   76 ITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG---QETIKLAIRALLEVV----ESGGKNIEVAVM 684
            +TV+SP G + Q+EYA+EAV++G+A VG++     VL   K++  +L   +  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   KA + G  S S R +LE++  E +     E +K  +RAL E +    +   KN+ + ++
Sbjct:    9 VTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 214          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 68/219 (31.05%), Postives = 121/219 (55.25%), Query Frame = 1
Query:   55 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGV-----RPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMT 687
            M  + +++  +S +G + Q+EYA++A+  G   +GVR  + ++L  EKK    LQ+ +SV K   + +HI L  +G+  D + ++ R+R  C SH     + ++VE + +Y++ L  ++ +         RPFG+S +I GFD     P LY  DPSG++ ++KA A G     +   LE  Y+E SG  ++++  +  L +V++      N+EV V+T
Sbjct:    1 MEDFKQSVNTYSSEGRIHQIEYAMKAMNLGTTTIGVRTKEFVILCSEKKILSTLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDT---EPRLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVMKDKISKDNVEVVVVT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 66/194 (34.02%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEV 645
            YD + + FSPDG +FQ++YA +AV K    +G+RG D +VL VEK  T KL +  +  +I +++ +I +A AGL AD   + + AR E  ++R   E  + ++++   +AG    YT    VRPFGLS ++  +D   G P LY+ +PSG+   + A A+G+     +  +EK   +    E ++ A   + +V
Sbjct:    8 YDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEG-PQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKV 200          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 71/200 (35.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK---NYKETSGQETIKLAIRALLEVVE 651
            +YD  +T +SP G LFQVEYA+EAV++G+A VG+R     VL    K+  +L   +  RK+  + +H  +A AGL AD RVL    R EC +H    + P+ V  +   +A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + FLE+    Y + + ++ IK A+ A+ E ++
Sbjct:    5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQ--RKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLD--ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQ 200          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 68/196 (34.69%), Postives = 111/196 (56.63%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQS--HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK---ETSGQETIKLAI 627
            A YD +I +FSP G L+Q+EYA +A++ G   +VG+RG D +V+  +KK   KL D +SV  +  L ++I     G+  D++   +RA  EC +  H+   + P  V  + + +A + Q  TQ    RP G++ +++G D   G P L++ DP+G F+ +KA A G        FLEK +K   + S  ETI++++
Sbjct:    7 AGYDMSI-IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNV--LAKRMADIAQLSTQHASARPLGVAMILIGIDDELG-PQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSL 198          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 73/215 (33.95%), Postives = 118/215 (54.88%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN---YKETSGQETIKLAIRALLEVV----ESGGKNIEVAVM 684
            +YD   T +SP G L QVEYALEA+++G+A VG+      VL   K++  +L   +  +K++ +D+HI +A AGL  DARVL N  + E  S +     P+ V  +   +A   Q  TQ  G RP+G+  L++G+D     P L +  PSG    +   + G  S S R ++E+N   + ++S +E I  A+RAL + +    E   +N+ ++V+
Sbjct:    5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ--KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYD--ESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVI 215          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 70/195 (35.90%), Postives = 103/195 (52.82%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK----NYKETSGQETIKLAIRAL 636
            YD + +VFSPDG  FQVEYA++AV  G  ++G++  D +V  VEK  T KL   +   KI  +D HI    +GL  D R L+NR R E  S +   + P+ +      +    Q +T    VRPFG+ST+  G D       LY  +PSG++  +K  ATG+   S +  LEK    + +  S +E +K A + +
Sbjct:    8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 69/195 (35.38%), Postives = 104/195 (53.33%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK-NYKETSGQETIKLAIRALLEV 645
            YD + T FSPDG +FQVEYA +AV     A+G+R  D +VL VEK    K+    + R+I ++D H  LA +GL AD R L++R R E  S+R      ++ + +   ++   Q Y+  G VRPFG S ++   D     P LY  +PSG    +   A G+ + + +  +EK    E + +E IK A + +  V
Sbjct:    6 YDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVD--KNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSV 198          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK 582
            YD ++T FSPDG +FQVEYA +AV      VG++  D IVLGVEK  T K+    S R+I S+  H  LA AGL AD R +++RA+ E  S+     +P++V+ +   +A      T    +RPFG   ++ G+D     P LY  +PSG    +   A G+   + +  +EK
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYD--RDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEK 178          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA6_DROME4.309e-2835.51Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA1_CHICK1.638e-2735.71Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA5_ENCCU3.648e-2731.05Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA3_DROME3.648e-2734.02Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA1_ORYSJ2.365e-2635.50Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA6_DICDI5.268e-2634.69Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA1_SCHPO8.986e-2633.95Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA3_YEAST2.002e-2535.90Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_ACACA7.607e-2535.38Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_ORYSJ9.935e-2537.57Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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