FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.333e-45
Identity = 103/212 (48.58%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  W+A A G   N+     E +Y +    E  IKLAI AL + +E    ++IEVA +T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPSPESIEVAYIT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 103/212 (48.58%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT 687
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+    +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  WKA A G   N+     E++Y +    E  IKLAI AL + +E    ++IEVA +T
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPSPESIEVAYIT 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 95/212 (44.81%), Postives = 140/212 (66.04%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVV--ESGGKNIEVAVM 684
            A YDRAITVFSPDG LFQVEYA EAV++G  ++G++ ++ IVL V+K++T  L ++ S+ KI  +D HI  A +GL ADAR L+ RAR+E Q +++T  +P+ V+ +++ +  + Q YTQ+GGVRPFG S LI+G   Y G+  L++TDPSG    +KA A G   ++  +  E  YK+     E I LA+ A+ E    E+   N+E+AV+
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFG-SALIIG-GVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHETTANNVEIAVI 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.971e-45
Identity = 91/201 (45.27%), Postives = 136/201 (67.66%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++   ++V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP L+ T+PSG +  ++A A G+   +  EFLEKNYKE  + +ETI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEK 208          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.067e-45
Identity = 94/213 (44.13%), Postives = 141/213 (66.20%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMT 687
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+  + +V+  EKK   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR     HRL  ++P++++Y+T+ I+ ++Q YTQ GGVRPFG++ ++ G D   GV  L+ T+PSG F  ++A A G+   +  ++LEKNYKE  S +ETI LA+ AL   ++ G K    N+E+   T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVD--RGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTLKPGEKLGPGNVEIGFAT 220          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK 663
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEK 208          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_THEON1.333e-4548.58Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_THEGJ1.741e-4548.58Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METS31.741e-4544.81Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_SULSO2.971e-4545.27Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_METS55.067e-4544.13Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_SULIY6.618e-4545.27Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN6.618e-4545.27Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM6.618e-4545.27Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL6.618e-4545.27Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK6.618e-4545.27Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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