FC931541

Overview
NameFC931541
Unique NameFC931541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10943 contig Ccv1_Contig10943:26..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.631e-43
Identity = 93/209 (44.50%), Postives = 135/209 (64.59%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEV 675
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+    +VL  EK+   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR +   HRL  ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ EKNY+E  + Q+TI L IRAL   ++ G K    NIEV
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEV 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.089e-43
Identity = 95/211 (45.02%), Postives = 135/211 (63.98%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMT 687
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E       I L + AL +  E       +EV V++
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEGKFDAGTLEVGVVS 217          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 96/212 (45.28%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   58 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVE--SGGKNIEVAVM 684
            A YDRAITVFSPDG LFQVEYA EAV++G  ++GV+  + IVL V+K+ T KL + +S+ KI  +D HI  A +GL ADAR +I +AR+E Q +R+T  +P+ VE + + I  ++Q YTQ GGVRPFG + LI+G     G   L++TDPSG    +KA A G    +  E  EK Y +     + I+LA+ A+ E  E  +  +++E+AV+
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFG-TALIIGGVNGRGC-RLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKTTPESVEIAVI 216          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 654
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 654
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 654
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 654
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.354e-42
Identity = 93/192 (48.44%), Postives = 128/192 (66.67%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRAL 636
            YDR IT+FSPDG L+QVEYA EAV++G A+VG+R  D IVL  +K+S   L +  SV KI   D+H+ +A AG  ADAR LI+ AR + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE+NY +E S  E + LA+R +
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTI 199          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.015e-42
Identity = 92/199 (46.23%), Postives = 131/199 (65.83%), Query Frame = 1
Query:   64 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVESG 657
            YDR IT+FSPDG L+QVEYA EAV++G A+VGVR  D +V+  ++ +   L +  S+ KI  +D+H+ +A AG  ADAR LI+ AR + Q +RL  ++P +VE +T+ I    Q+YTQ+GG RPFG++ L+ G +   G P L++TDPSGT   W+A A G +   ++ FLE+ Y E    E  I+LA+RAL  V E G
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDG 205          
BLAST of FC931541 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 84/200 (42.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   61 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES 654
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D +VL  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +  + ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WKA A G N+ + +  L+++YK + + ++ +KLA++AL + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTMDS 202          
The following BLAST results are available for this feature:
BLAST of FC931541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_SULTO3.631e-4344.50Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_METMA8.089e-4345.02Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METTH1.802e-4245.28Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSA4B_ORYSJ1.802e-4243.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI1.802e-4243.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ1.802e-4243.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI1.802e-4243.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSMA_HALWD2.354e-4248.44Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA2_HALMA4.015e-4246.23Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA4_SPIOL8.944e-4242.00Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]

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Properties
Property NameValue
Genbank descriptionC34106C03EF PostHarvP1 Citrus clementina cDNA clone C34106C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931541 ID=FC931541; Name=FC931541; organism=Citrus clementina; type=EST; length=688bp
GAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAATCAGAGAGATT
TGACATGGCGAGATACGATCGAGCAATCACTGTATTTTCACCGGATGGCC
ACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCAAAGGCAACGCC
GCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGCGTCGAAAAGAA
ATCCACTGTCAAGCTTCAGGATTCTAGATCAGTGAGGAAGATTGTCAGCT
TGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAGCAGATGCTCGT
GTCCTGATAAACAGGGCTCGAATAGAATGTCAGAGCCACAGGCTGACTGT
TGAGGACCCAGTAACTGTTGAGTACATCACTCGATACATTGCAGGTCTCC
AGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTGGTCTTTCTACT
CTGATTGTGGGCTTTGATCCATACACTGGCGTGCCGTCACTATATCAGAC
AGATCCTTCTGGGACATTTTCTGCCTGGAAAGCTAATGCAACTGGGAGAA
ACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATAAGGAAACTTCC
GGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTTGAGGTTGTTGA
GAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAA
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